CHAT, choline O-acetyltransferase, 1103

N. diseases: 230; N. variants: 39
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1431506976
rs1431506976
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0751882
Disease:
Myasthenic Syndromes, Congenital
0.010 GeneticVariation BEFREE The most common CMS was primary acetylcholine receptor (AChR) deficiency (31/51) and the most common mutations in AChR were c.1219 + 2T > G (12/51) and c.1327delG (6/51) in CHRNE. 29395675 2018
dbSNP: rs3793798
rs3793798
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0040517
Disease:
Gilles de la Tourette syndrome
0.010 GeneticVariation BEFREE Also, rs3793798 also indicated a positive association associated with TS (TDT, χ<sup>2 </sup>=<sup> </sup>5.025, P = 0.028; HRR, χ<sup>2 </sup>=<sup> </sup>0.250, P = 0.617). 28090804 2018
dbSNP: rs775282060
rs775282060
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0751882
Disease:
Myasthenic Syndromes, Congenital
0.010 GeneticVariation BEFREE Remarkably, several founder mutations made a large contribution to CMS in Spain: RAPSN c.264C > A (p.Asn88Lys), CHRNE c.130insG (Glu44Glyfs*3), CHRNE c.1353insG (p.Asn542Gluf*4), DOK7 c.1124_1127dup (p.Ala378Serfs*30), and particularly frequent in Spain in comparison with other populations, COLQ c.1289A > C (p.Tyr430Ser). 29054425 2017
dbSNP: rs769085306
rs769085306
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0035372
Disease:
Rett Syndrome
0.010 GeneticVariation BEFREE To model RTT in vitro, we generated induced pluripotent stem cells (iPSCs) from fibroblasts of two RTT patients with different mutations (MECP2 (R306C) and MECP2 (1155Δ32)) in their MECP2 gene. 27379379 2016
dbSNP: rs2177370
rs2177370
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0002395
Disease:
Alzheimer's Disease
0.010 GeneticVariation BEFREE The response to AChEIs in AD patients was significantly associated with 2 SNPs on the intronic region of CHAT rs2177370 (uncorrected P=0.0025, FDR controlled P=0.026) and rs3793790 (uncorrected P=0.0024, FDR controlled P=0.026). 25730470 2015
dbSNP: rs3793790
rs3793790
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0002395
Disease:
Alzheimer's Disease
0.010 GeneticVariation BEFREE The response to AChEIs in AD patients was significantly associated with 2 SNPs on the intronic region of CHAT rs2177370 (uncorrected P=0.0025, FDR controlled P=0.026) and rs3793790 (uncorrected P=0.0024, FDR controlled P=0.026). 25730470 2015
dbSNP: rs3810950
rs3810950
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0041696
Disease:
Unipolar Depression
0.010 GeneticVariation BEFREE For depressive symptoms, we found a nominally significant association of rs3810950 with minor and major depression (p = 0.023, genotype; p = 0.008, allele). 21507424 2011
dbSNP: rs3810950
rs3810950
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C1269683
Disease:
Major Depressive Disorder
0.010 GeneticVariation BEFREE For depressive symptoms, we found a nominally significant association of rs3810950 with minor and major depression (p = 0.023, genotype; p = 0.008, allele). 21507424 2011
dbSNP: rs8178990
rs8178990
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0002395
Disease:
Alzheimer's Disease
0.010 GeneticVariation BEFREE The ChAT rs3810950 A allele, which has been associated with increased risk for AD, was found to be associated with a decrease cognitive status evaluated by a five-component cognitive composite score [P = 0.03, regression coefficient -0.30, 95% confidence interval (CI) -0.57 to -0.02], and the rs3810950 and rs8178990 ancestral GC haplotype was also associated with better cross-sectional cognitive composite score (P = 0.04, regression coefficient 0.59, 95% CI 0.03 to 1.16). 21883924 2011
dbSNP: rs10082479
rs10082479
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0028043
Disease:
Nicotine Dependence
0.010 GeneticVariation BEFREE Haplotype-based association analysis revealed that haplotypes G-G-A-C, formed by rs1880676-rs3810950-rs10082479-rs8178990 (P = 0.005-0.0178), and G-G-T-C-G-C, formed by rs1880676-rs3810950-rs10082479-rs8178990-rs3793790-rs12266458 (P = 0.00247-0.00468), displayed significant association with all three ND measures in the AA sample, as did haplotype T-C-G-A-T, formed by rs12266458-rs11101191-rs8178991-rs4838544-rs4838547 (P = 0.00741-0.0103), in the EA sample. 20383528 2010
dbSNP: rs12266458
rs12266458
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0028043
Disease:
Nicotine Dependence
0.010 GeneticVariation BEFREE Haplotype-based association analysis revealed that haplotypes G-G-A-C, formed by rs1880676-rs3810950-rs10082479-rs8178990 (P = 0.005-0.0178), and G-G-T-C-G-C, formed by rs1880676-rs3810950-rs10082479-rs8178990-rs3793790-rs12266458 (P = 0.00247-0.00468), displayed significant association with all three ND measures in the AA sample, as did haplotype T-C-G-A-T, formed by rs12266458-rs11101191-rs8178991-rs4838544-rs4838547 (P = 0.00741-0.0103), in the EA sample. 20383528 2010
dbSNP: rs1880676
rs1880676
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0028043
Disease:
Nicotine Dependence
0.010 GeneticVariation BEFREE Haplotype-based association analysis revealed that haplotypes G-G-A-C, formed by rs1880676-rs3810950-rs10082479-rs8178990 (P = 0.005-0.0178), and G-G-T-C-G-C, formed by rs1880676-rs3810950-rs10082479-rs8178990-rs3793790-rs12266458 (P = 0.00247-0.00468), displayed significant association with all three ND measures in the AA sample, as did haplotype T-C-G-A-T, formed by rs12266458-rs11101191-rs8178991-rs4838544-rs4838547 (P = 0.00741-0.0103), in the EA sample. 20383528 2010
dbSNP: rs3793790
rs3793790
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0028043
Disease:
Nicotine Dependence
0.010 GeneticVariation BEFREE Haplotype-based association analysis revealed that haplotypes G-G-A-C, formed by rs1880676-rs3810950-rs10082479-rs8178990 (P = 0.005-0.0178), and G-G-T-C-G-C, formed by rs1880676-rs3810950-rs10082479-rs8178990-rs3793790-rs12266458 (P = 0.00247-0.00468), displayed significant association with all three ND measures in the AA sample, as did haplotype T-C-G-A-T, formed by rs12266458-rs11101191-rs8178991-rs4838544-rs4838547 (P = 0.00741-0.0103), in the EA sample. 20383528 2010
dbSNP: rs4838547
rs4838547
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0028043
Disease:
Nicotine Dependence
0.010 GeneticVariation BEFREE Haplotype-based association analysis revealed that haplotypes G-G-A-C, formed by rs1880676-rs3810950-rs10082479-rs8178990 (P = 0.005-0.0178), and G-G-T-C-G-C, formed by rs1880676-rs3810950-rs10082479-rs8178990-rs3793790-rs12266458 (P = 0.00247-0.00468), displayed significant association with all three ND measures in the AA sample, as did haplotype T-C-G-A-T, formed by rs12266458-rs11101191-rs8178991-rs4838544-rs4838547 (P = 0.00741-0.0103), in the EA sample. 20383528 2010
dbSNP: rs8178990
rs8178990
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0028043
Disease:
Nicotine Dependence
0.010 GeneticVariation BEFREE Haplotype-based association analysis revealed that haplotypes G-G-A-C, formed by rs1880676-rs3810950-rs10082479-rs8178990 (P = 0.005-0.0178), and G-G-T-C-G-C, formed by rs1880676-rs3810950-rs10082479-rs8178990-rs3793790-rs12266458 (P = 0.00247-0.00468), displayed significant association with all three ND measures in the AA sample, as did haplotype T-C-G-A-T, formed by rs12266458-rs11101191-rs8178991-rs4838544-rs4838547 (P = 0.00741-0.0103), in the EA sample. 20383528 2010
dbSNP: rs121912823
rs121912823
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0231230
Disease:
Fatigability
0.010 GeneticVariation BEFREE The missense mutation I336T has been identified in Turkish population, and most of the cases carrying this mutation present with exercise-induced fatigability and ptosis. 19289695 2009
dbSNP: rs121912823
rs121912823
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0033377
Disease:
Ptosis
0.010 GeneticVariation BEFREE The missense mutation I336T has been identified in Turkish population, and most of the cases carrying this mutation present with exercise-induced fatigability and ptosis. 19289695 2009
dbSNP: rs121912823
rs121912823
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0476273
Disease:
Respiratory distress
0.010 GeneticVariation BEFREE We present a case of congenital myasthenic syndrome with I336T choline acetyltransferase mutation who presented with numerous attacks of respiratory distress in the infancy period. 19289695 2009
dbSNP: rs121912823
rs121912823
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0005745
Disease:
Blepharoptosis
0.010 GeneticVariation BEFREE The missense mutation I336T has been identified in Turkish population, and most of the cases carrying this mutation present with exercise-induced fatigability and ptosis. 19289695 2009
dbSNP: rs121912823
rs121912823
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0751882
Disease:
Myasthenic Syndromes, Congenital
0.010 GeneticVariation BEFREE We present a case of congenital myasthenic syndrome with I336T choline acetyltransferase mutation who presented with numerous attacks of respiratory distress in the infancy period. 19289695 2009
dbSNP: rs772659997
rs772659997
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0011570
Disease:
Mental Depression
0.010 GeneticVariation BEFREE Associations between AD and/or depression to gene polymorphisms APO E (epsilon4), choline acetyltransferase (ChAT) 4G to A, serotonin-transporter gene promoter-length, dopamine-D4-receptor, ciliary-neurotrophic-factor-null mutation and brain-derived neurotrophic factor (C270T) and to various known factors were analyzed. 18603262 2009
dbSNP: rs772659997
rs772659997
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0344315
Disease:
Depressed mood
0.010 GeneticVariation BEFREE Associations between AD and/or depression to gene polymorphisms APO E (epsilon4), choline acetyltransferase (ChAT) 4G to A, serotonin-transporter gene promoter-length, dopamine-D4-receptor, ciliary-neurotrophic-factor-null mutation and brain-derived neurotrophic factor (C270T) and to various known factors were analyzed. 18603262 2009
dbSNP: rs772659997
rs772659997
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0002395
Disease:
Alzheimer's Disease
0.010 GeneticVariation BEFREE Associations between AD and/or depression to gene polymorphisms APO E (epsilon4), choline acetyltransferase (ChAT) 4G to A, serotonin-transporter gene promoter-length, dopamine-D4-receptor, ciliary-neurotrophic-factor-null mutation and brain-derived neurotrophic factor (C270T) and to various known factors were analyzed. 18603262 2009
dbSNP: rs772659997
rs772659997
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0011581
Disease:
Depressive disorder
0.010 GeneticVariation BEFREE Associations between AD and/or depression to gene polymorphisms APO E (epsilon4), choline acetyltransferase (ChAT) 4G to A, serotonin-transporter gene promoter-length, dopamine-D4-receptor, ciliary-neurotrophic-factor-null mutation and brain-derived neurotrophic factor (C270T) and to various known factors were analyzed. 18603262 2009
dbSNP: rs1455460144
rs1455460144
Entrez Id: 1103
Gene Symbol: CHAT
CHAT
CUI: C0002395
Disease:
Alzheimer's Disease
0.010 GeneticVariation BEFREE Polymorphisms at the paraoxonase 1 L55M and Q192R loci affect the pathophysiology of Alzheimer's disease: emphasis on the cholinergic system and beta-amyloid levels. 18322397 2008