COL2A1, collagen type II alpha 1 chain, 1280

N. diseases: 496; N. variants: 96
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs121912882
rs121912882
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0265253
Disease:
Stickler syndrome (disorder)
0.010 GeneticVariation BEFREE A p.R904C variant of the COL2A1 gene was found in a patient, who was accordingly diagnosed with Stickler syndrome. 30541462 2018
dbSNP: rs1793937
rs1793937
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0158266
Disease:
Intervertebral Disc Degeneration
0.010 GeneticVariation BEFREE This case-control study was designed to evaluate the association of three COL2A1 single nucleotide polymorphism (SNPs) (rs1793953, rs2276454, and rs1793937) and Aggrecan variable number of tandem repeat (VNTR) polymorphisms with the risk and clinicopathological features of intervertebral disc degeneration (IVDD) in a Chinese Han population. 27991836 2017
dbSNP: rs1793953
rs1793953
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0158266
Disease:
Intervertebral Disc Degeneration
0.010 GeneticVariation BEFREE Personal history of spine sprain or crush injury, history of IVDD in a first-degree relative, and COL2A1 rs2276454 and Aggrecan VNTR presence may be independent risk factors of IVDD (all p < 0.05, odds ratio [OR] >1), whereas tea drinking habit, part-time sports participation, and COL2A1 rs1793953 presence may be protective factors of IVDD (all p < 0.05, OR <1). 27991836 2017
dbSNP: rs2276454
rs2276454
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0158266
Disease:
Intervertebral Disc Degeneration
0.010 GeneticVariation BEFREE Personal history of spine sprain or crush injury, history of IVDD in a first-degree relative, and COL2A1 rs2276454 and Aggrecan VNTR presence may be independent risk factors of IVDD (all p < 0.05, odds ratio [OR] >1), whereas tea drinking habit, part-time sports participation, and COL2A1 rs1793953 presence may be protective factors of IVDD (all p < 0.05, OR <1). 27991836 2017
dbSNP: rs886044555
rs886044555
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0410528
Disease:
Skeletal dysplasia
0.010 GeneticVariation BEFREE Recurrent c.G1636A (p.G546S) mutation of COL2A1 in a Chinese family with skeletal dysplasia and different metaphyseal changes: a case report. 28738883 2017
dbSNP: rs886044555
rs886044555
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0029422
Disease:
Osteochondrodysplasias
0.010 GeneticVariation BEFREE Recurrent c.G1636A (p.G546S) mutation of COL2A1 in a Chinese family with skeletal dysplasia and different metaphyseal changes: a case report. 28738883 2017
dbSNP: rs1635532
rs1635532
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0085096
Disease:
Peripheral Vascular Diseases
0.010 GeneticVariation BEFREE Finally, using a specific cohort of patients with PVD-associated RRD and a control population, we demonstrate a significant difference in the frequency of the COL2A1 intronic variant rs1635532 between the two groups. 27406592 2016
dbSNP: rs1635532
rs1635532
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0271055
Disease:
Rhegmatogenous retinal detachment
0.010 GeneticVariation BEFREE Finally, using a specific cohort of patients with PVD-associated RRD and a control population, we demonstrate a significant difference in the frequency of the COL2A1 intronic variant rs1635532 between the two groups. 27406592 2016
dbSNP: rs1480620991
rs1480620991
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0432215
Disease:
Progressive pseudorheumatoid dysplasia
0.010 GeneticVariation BEFREE In the first family, we performed whole-exome sequencing on three family members, two of whom have a PPRD-like phenotype, and identified a heterozygous variant (c.619G>A, p.Gly207Arg) in both affected individuals. 26183434 2015
dbSNP: rs1480620991
rs1480620991
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C4225273
Disease:
SPONDYLOEPIPHYSEAL DYSPLASIA, STANESCU TYPE
0.010 GeneticVariation BEFREE Novel COL2A1 variant (c.619G>A, p.Gly207Arg) manifesting as a phenotype similar to progressive pseudorheumatoid dysplasia and spondyloepiphyseal dysplasia, Stanescu type. 26183434 2015
dbSNP: rs869312907
rs869312907
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0432215
Disease:
Progressive pseudorheumatoid dysplasia
0.010 GeneticVariation BEFREE We suggest that the p.Gly207Arg variant causes a distinct type II collagenopathy with features of PPRD and SED, Stanescu type. 26183434 2015
dbSNP: rs1193507525
rs1193507525
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0023234
Disease:
Legg-Calve-Perthes Disease
0.010 GeneticVariation BEFREE In our research, we identify a heterozygous mutation (c.1888 G>A, p. Gly630Ser) in exon 29 of COL2A1 in the Gly-X-Y domain, in a Chinese family affected by LCPD and ANFH. 24949742 2014
dbSNP: rs1193507525
rs1193507525
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0410480
Disease:
Avascular Necrosis of Femur Head
0.010 GeneticVariation BEFREE In our research, we identify a heterozygous mutation (c.1888 G>A, p. Gly630Ser) in exon 29 of COL2A1 in the Gly-X-Y domain, in a Chinese family affected by LCPD and ANFH. 24949742 2014
dbSNP: rs121912892
rs121912892
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0023234
Disease:
Legg-Calve-Perthes Disease
0.010 GeneticVariation BEFREE In our research, we identify a heterozygous mutation (c.1888 G>A, p. Gly630Ser) in exon 29 of COL2A1 in the Gly-X-Y domain, in a Chinese family affected by LCPD and ANFH. 24949742 2014
dbSNP: rs121912892
rs121912892
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0410480
Disease:
Avascular Necrosis of Femur Head
0.010 GeneticVariation BEFREE In our research, we identify a heterozygous mutation (c.1888 G>A, p. Gly630Ser) in exon 29 of COL2A1 in the Gly-X-Y domain, in a Chinese family affected by LCPD and ANFH. 24949742 2014
dbSNP: rs1793953
rs1793953
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0399526
Disease:
Class III malocclusion
0.010 GeneticVariation BEFREE In the analysis of individual SNPs, the SNP rs1793953 in the COL2A1 gene showed a possible association with MP with regard to allelic frequency and genotypic distribution (p = 0.031; p = 0.025, respectively) in the 211 cases and 224 controls. 24386886 2014
dbSNP: rs886044555
rs886044555
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C2745959
Disease:
Spondyloepiphyseal dysplasia, congenita
0.010 GeneticVariation BEFREE This is the first familial report of G546S mutation in the COL2A1 gene that results in SEDC. 24736929 2014
dbSNP: rs1635529
rs1635529
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0271183
Disease:
Severe myopia
0.010 GeneticVariation BEFREE We do not find evidence to support an association of SNP rs1635529 in COL2A1 with high myopia in the Chinese population studied, nor of the other two SNPs (rs60542319 and rs954326). 21993774 2012
dbSNP: rs1635529
rs1635529
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0027092
Disease:
Myopia
0.010 GeneticVariation BEFREE Association studies have revealed that the rs1635529 polymorphism in the COL2A1 (collagen, type Ⅱ, α 1) gene may be a potential candidate for myopia development and may be associated with myopia in Caucasians. 21993774 2012
dbSNP: rs60542319
rs60542319
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0271183
Disease:
Severe myopia
0.010 GeneticVariation BEFREE We do not find evidence to support an association of SNP rs1635529 in COL2A1 with high myopia in the Chinese population studied, nor of the other two SNPs (rs60542319 and rs954326). 21993774 2012
dbSNP: rs954326
rs954326
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0271183
Disease:
Severe myopia
0.010 GeneticVariation BEFREE There was no statistically significant difference in genotype, allele and haplotype frequencies for the other three SNPs (rs1635529, rs60542319 and rs954326) between the high myopia</span> group and the control group. 21993774 2012
dbSNP: rs2070739
rs2070739
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0029408
Disease:
Degenerative polyarthritis
0.010 GeneticVariation BEFREE The G4006A AA homozygous genotype significantly increased in the OA patients, when compared with that in the control women (P<0.05, χ2), with 24.2% (29/120) in the OA group and 10.0% (12/120) in the control group; The A allele accounted for 49.2% (118/240) in the OA group and 35.8% (86/240) in the control group. 21088911 2011
dbSNP: rs2276454
rs2276454
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0029408
Disease:
Degenerative polyarthritis
0.010 GeneticVariation BEFREE There was no difference in the T2088C genotypes between the OA and control groups. 21088911 2011
dbSNP: rs2276455
rs2276455
Entrez Id: 1280;105369752
Gene Symbol: COL2A1;LOC105369752
COL2A1;LOC105369752
CUI: C0029408
Disease:
Degenerative polyarthritis
0.010 GeneticVariation BEFREE To study the role of two COL2A1 single nucleotide polymorphisms (rs3737548 and rs2276455) and their haplotypes in individual susceptibility to osteoarthritis (OA) of the hand in Finnish women. 19019890 2009
dbSNP: rs3737548
rs3737548
Entrez Id: 1280
Gene Symbol: COL2A1
COL2A1
CUI: C0029408
Disease:
Degenerative polyarthritis
0.010 GeneticVariation BEFREE To study the role of two COL2A1 single nucleotide polymorphisms (rs3737548 and rs2276455) and their haplotypes in individual susceptibility to osteoarthritis (OA) of the hand in Finnish women. 19019890 2009