FANCA, FA complementation group A, 2175

N. diseases: 211; N. variants: 206
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1057516430
rs1057516430
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
0.710 GeneticVariation BEFREE DNA sequencing of the FANCA gene in 8 unrelated Spanish Gypsy FA families after retroviral subtyping revealed a homozygous FANCA mutation (295C>T) leading to FANCA truncation and FA pathway disruption. 15522956 2005
dbSNP: rs17233497
rs17233497
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
0.710 GeneticVariation BEFREE Three of the amino acid changes, namely Thr561Met, Cys625Ser and particularly Ser1088Phe, which has been previously reported to be associated with FA, are predicted to be damaging by the SIFT and PolyPhen softwares. cDNA amplification revealed significant expression of 4 alternative splicing events (insertion of an intronic portion of intron 10, and the skipping of exons 11, 30 and 31). 23021409 2013
dbSNP: rs1057516430
rs1057516430
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C0015625
Disease:
Fanconi Anemia
0.010 GeneticVariation BEFREE DNA sequencing of the FANCA gene in 8 unrelated Spanish Gypsy FA families after retroviral subtyping revealed a homozygous FANCA mutation (295C>T) leading to FANCA truncation and FA pathway disruption. 15522956 2005
dbSNP: rs1279983084
rs1279983084
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C1306459
Disease:
Primary malignant neoplasm
0.010 GeneticVariation BEFREE All mutations were recurrent, but no significant association with cancer susceptibility was observed for any: the prevalence of FANCI c.2957_2969del and c.3041G>A mutations was even highest in healthy males (1.7%). 24989076 2015
dbSNP: rs1279983084
rs1279983084
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C0006826
Disease:
Malignant Neoplasms
0.010 GeneticVariation BEFREE All mutations were recurrent, but no significant association with cancer susceptibility was observed for any: the prevalence of FANCI c.2957_2969del and c.3041G>A mutations was even highest in healthy males (1.7%). 24989076 2015
dbSNP: rs1374262828
rs1374262828
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C1861028
Disease:
Esophageal atresia with or without tracheoesophageal fistula
0.010 GeneticVariation BEFREE FANCA mutations were significantly overrepresented in EA/TEF patients compared with 4300 control subjects from the NHLBI-ESP project (Fisher's exact p = 2.17 × 10<sup>-5</sup>, odds ratio = 31.75). p.A958V, a novel de novo mutation in the FANCA gene, was identified in one patient with EA/TEF. 29621589 2018
dbSNP: rs139235751
rs139235751
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
0.010 GeneticVariation BEFREE Three of the amino acid changes, namely Thr561Met, Cys625Ser and particularly Ser1088Phe, which has been previously reported to be associated with FA, are predicted to be damaging by the SIFT and PolyPhen softwares. cDNA amplification revealed significant expression of 4 alternative splicing events (insertion of an intronic portion of intron 10, and the skipping of exons 11, 30 and 31). 23021409 2013
dbSNP: rs139235751
rs139235751
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C0015625
Disease:
Fanconi Anemia
0.010 GeneticVariation BEFREE Three of the amino acid changes, namely Thr561Met, Cys625Ser and particularly Ser1088Phe, which has been previously reported to be associated with FA, are predicted to be damaging by the SIFT and PolyPhen softwares. cDNA amplification revealed significant expression of 4 alternative splicing events (insertion of an intronic portion of intron 10, and the skipping of exons 11, 30 and 31). 23021409 2013
dbSNP: rs17227424
rs17227424
Entrez Id: 2175;92822
Gene Symbol: FANCA;ZNF276
FANCA;ZNF276
CUI: C0596263
Disease:
Carcinogenesis
0.010 GeneticVariation BEFREE Absence of the wild-type allele in tumors carrying the E530D variant suggests a possible role for this change in tumorigenesis. 14605947 2003
dbSNP: rs17233497
rs17233497
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C0015625
Disease:
Fanconi Anemia
0.010 GeneticVariation BEFREE Three of the amino acid changes, namely Thr561Met, Cys625Ser and particularly Ser1088Phe, which has been previously reported to be associated with FA, are predicted to be damaging by the SIFT and PolyPhen softwares. cDNA amplification revealed significant expression of 4 alternative splicing events (insertion of an intronic portion of intron 10, and the skipping of exons 11, 30 and 31). 23021409 2013
dbSNP: rs2239359
rs2239359
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C0006826
Disease:
Malignant Neoplasms
0.010 GeneticVariation BEFREE The FANCA haplotype that included G501S also conferred increased risk of CIN3 or cancer, as did a different haplotype that included 2 other FANCA SNPs (G809A and T266A). 19012493 2009
dbSNP: rs2239359
rs2239359
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C1306459
Disease:
Primary malignant neoplasm
0.010 GeneticVariation BEFREE The FANCA haplotype that included G501S also conferred increased risk of CIN3 or cancer, as did a different haplotype that included 2 other FANCA SNPs (G809A and T266A). 19012493 2009
dbSNP: rs75570604
rs75570604
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C0025202
Disease:
melanoma
0.010 GeneticVariation BEFREE Individuals having melanoma in a visibly UV-damaged site were more likely to carry MC1R rs75570604 (odds ratio [OR] 2.5), 9q31.2 rs10816595 (OR 2.5), and MTAP rs869329 (OR 1.4); these same alleles were more common in MPM patients diagnosed ≤40 years. 31794051 2019
dbSNP: rs761725308
rs761725308
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
0.010 GeneticVariation BEFREE A patient-derived FANCA truncation mutant (Q772X) has diminished affinity for both DNA and RNA. 22194614 2012
dbSNP: rs778093769
rs778093769
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
0.010 GeneticVariation BEFREE Rare missense variants were identified in FANCA (Fanconi anemia complementation group A): c.1772G > A (p.R591Q) and c.3887A > G (p.E1296G). 31535215 2019
dbSNP: rs878853666
rs878853666
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C0015625
Disease:
Fanconi Anemia
0.010 GeneticVariation BEFREE Therefore, the hypomorphic Leu153Ser mutation represents the first example of a FANCD2 defect that might promote clonal progression of tumors, such as T-ALL, and severe chemotherapy toxicity in patients without any clinical manifestations typical of FA. 17096012 2007
dbSNP: rs878853666
rs878853666
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C0027651
Disease:
Neoplasms
0.010 GeneticVariation BEFREE Therefore, the hypomorphic Leu153Ser mutation represents the first example of a FANCD2 defect that might promote clonal progression of tumors, such as T-ALL, and severe chemotherapy toxicity in patients without any clinical manifestations typical of FA. 17096012 2007
dbSNP: rs878853666
rs878853666
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C1961099
Disease:
Precursor T-Cell Lymphoblastic Leukemia-Lymphoma
0.010 GeneticVariation BEFREE A novel Leu153Ser mutation of the Fanconi anemia FANCD2 gene is associated with severe chemotherapy toxicity in a pediatric T-cell acute lymphoblastic leukemia. 17096012 2007
dbSNP: rs878853666
rs878853666
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
0.010 GeneticVariation BEFREE Therefore, the hypomorphic Leu153Ser mutation represents the first example of a FANCD2 defect that might promote clonal progression of tumors, such as T-ALL, and severe chemotherapy toxicity in patients without any clinical manifestations typical of FA. 17096012 2007
dbSNP: rs148473140
rs148473140
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
A 0.800 GeneticVariation CLINVAR FANCA Gene Mutations with 8 Novel Molecular Changes in Indian Fanconi Anemia Patients. 26799702 2016
dbSNP: rs148473140
rs148473140
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
A 0.800 GeneticVariation CLINVAR A cytoplasmic serine protein kinase binds and may regulate the Fanconi anemia protein FANCA. 11739169 2001
dbSNP: rs148473140
rs148473140
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
A 0.800 GeneticVariation CLINVAR Spectrum of sequence variations in the FANCA gene: an International Fanconi Anemia Registry (IFAR) study. 15643609 2005
dbSNP: rs148473140
rs148473140
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
A 0.800 GeneticVariation CLINVAR Heterogeneous activation of the Fanconi anemia pathway by patient-derived FANCA mutants. 12444097 2002
dbSNP: rs148473140
rs148473140
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
A 0.800 GeneticVariation CLINVAR The FANCA gene in Japanese Fanconi anemia: reports of eight novel mutations and analysis of sequence variability. 10090479 1999
dbSNP: rs148473140
rs148473140
Entrez Id: 2175
Gene Symbol: FANCA
FANCA
CUI: C3469521
Disease:
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)
A 0.800 GeneticVariation CLINVAR Variant ALDH2 is associated with accelerated progression of bone marrow failure in Japanese Fanconi anemia patients. 24037726 2013