LIPA, lipase A, lysosomal acid type, 3988

N. diseases: 130; N. variants: 50
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.740 GeneticVariation BEFREE The commonest genetic cause of cholesteryl ester storage disease is an exon 8 splice junction variant in the LIPA gene (rs116928232, c.894G>A; E8SJM) previously found to have an allele frequency of 0.0011 (1 in 450 individuals) in a large European population. 30056760 2019
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.740 GeneticVariation BEFREE Meta-analysis of existing genetic studies estimated the prevalence of LAL-D as 1 per 160,000 (95% CI 1 per 65,025-761,652) using the allele frequency of c.894G>A in LIPA. 30315827 2019
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.740 GeneticVariation BEFREE Mutational analysis of the patient's blood showed the homozygous G-->A mutation at position -1 of the exon 8 splice donor site (E8SJM-allele) known for adult cholesteryl ester storage disease (CESD); the polymorphic background was that of the complex haplotype -6Thr, 2Gly, 894 G-->A. 10551400 1999
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.740 GeneticVariation BEFREE Moreover, future studies on CESD prevalence in African and Asian populations may require full-gene LIPA sequencing to determine heterozygote frequencies, since c.894G>A is not common in these racial groups. 23424026 2013
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0008384
Disease:
Cholesterol Ester Storage Disease
0.730 GeneticVariation BEFREE Mutational analysis of the patient's blood showed the homozygous G-->A mutation at position -1 of the exon 8 splice donor site (E8SJM-allele) known for adult cholesteryl ester storage disease (CESD); the polymorphic background was that of the complex haplotype -6Thr, 2Gly, 894 G-->A. 10551400 1999
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0008384
Disease:
Cholesterol Ester Storage Disease
0.730 GeneticVariation BEFREE Frequency of the cholesteryl ester storage disease common LIPA E8SJM mutation (c.894G>A) in various racial and ethnic groups. 23424026 2013
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0008384
Disease:
Cholesterol Ester Storage Disease
0.730 GeneticVariation BEFREE The commonest genetic cause of cholesteryl ester storage disease is an exon 8 splice junction variant in the LIPA gene (rs116928232, c.894G>A; E8SJM) previously found to have an allele frequency of 0.0011 (1 in 450 individuals) in a large European population. 30056760 2019
dbSNP: rs1412444
rs1412444
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1956346
Disease:
Coronary Artery Disease
0.710 GeneticVariation BEFREE These results indicate that the rs1412444 and rs2246833 of the LIPA gene are shared susceptibility polymorphisms for CAD among different ethnicities. 24069331 2013
dbSNP: rs1423914418
rs1423914418
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.710 GeneticVariation BEFREE The dosage of serum lysosomal acid lipase was undetectable and we found the presence of a rare homozygous mutation in the gene associated with the lysosomal acid lipase deficiency, (allele c.386A > G homozygous p.H129R). 31113597 2020
dbSNP: rs1457072724
rs1457072724
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.710 GeneticVariation BEFREE The c.894G>A mutation was found in homozygosity in four patients and, as compound heterozygosity, in association with a known (p.H295Y and p.G342R) or a novel (p.W140*) mutation in four other CESD patients. 22227072 2012
dbSNP: rs2246942
rs2246942
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010068
Disease:
Coronary heart disease
0.710 GeneticVariation BEFREE In the present study, two single nucleotide polymorphisms (SNPs) of genes involved in lipid metabolism (rs2246942 and rs7767084) were identified to be significantly associated with CHD in the Han Chinese population. 23653095 2013
dbSNP: rs267607218
rs267607218
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.710 GeneticVariation BEFREE The WD patients, all deceased before the first year of age, were homozygous for two novel mutations (c.299+1G>A and c.419G>A) or a mutation (c.796G>T) previously reported as compound heterozygosity in a CESD patient. 22227072 2012
dbSNP: rs587778878
rs587778878
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.710 GeneticVariation BEFREE Wolman disease (LIPA p.G87V) genotype frequency in people of Iranian-Jewish ancestry. 21291321 2011
dbSNP: rs776472526
rs776472526
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0043208
Disease:
Wolman Disease
0.710 GeneticVariation BEFREE The c.894G>A mutation was found in homozygosity in four patients and, as compound heterozygosity, in association with a known (p.H295Y and p.G342R) or a novel (p.W140*) mutation in four other CESD patients. 22227072 2012
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010054
Disease:
Coronary Arteriosclerosis
0.020 GeneticVariation BEFREE Our findings show that the coronary artery disease-associated coding variant rs1051338 causes reduced lysosomal LAL protein and activity because of increased LAL degradation, providing a plausible causal mechanism of increased coronary artery disease risk. 28279971 2017
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010068
Disease:
Coronary heart disease
0.020 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338</span>, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1956346
Disease:
Coronary Artery Disease
0.020 GeneticVariation BEFREE Our findings show that the coronary artery disease-associated coding variant rs1051338 causes reduced lysosomal LAL protein and activity because of increased LAL degradation, providing a plausible causal mechanism of increased coronary artery disease risk. 28279971 2017
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010068
Disease:
Coronary heart disease
0.020 GeneticVariation BEFREE Our findings show that the coronary artery disease-associated coding variant rs1051338 causes reduced lysosomal LAL protein and activity because of increased LAL degradation, providing a plausible causal mechanism of increased coronary artery disease risk. 28279971 2017
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010054
Disease:
Coronary Arteriosclerosis
0.020 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338</span>, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1956346
Disease:
Coronary Artery Disease
0.020 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338</span>, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1843013
Disease:
Alzheimer disease, familial, type 3
0.010 GeneticVariation BEFREE We found that LIPA exon 2 polymorphism (rs1051338) influenced plasma 24S-hydroxycholesterol/cholesterol ratios in AD patients where carriers of the C/C allele presented with higher ratios than heterozygote carriers of the LIPA allele. 16730122 2006
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0494463
Disease:
Alzheimer Disease, Late Onset
0.010 GeneticVariation BEFREE We investigated two LIPA polymorphisms (rs1051338 and rs2297472) for their putative effect on the risk of LOAD in a homogenous sample of German origin. 16730122 2006
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0002395
Disease:
Alzheimer's Disease
0.010 GeneticVariation BEFREE We found that LIPA exon 2 polymorphism (rs1051338) influenced plasma 24S-hydroxycholesterol/cholesterol ratios in AD patients where carriers of the C/C allele presented with higher ratios than heterozygote carriers of the LIPA allele. 16730122 2006
dbSNP: rs1051339
rs1051339
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010068
Disease:
Coronary heart disease
0.010 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051339
rs1051339
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1956346
Disease:
Coronary Artery Disease
0.010 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019