Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0432072
Disease:
Dysmorphic features
T 0.700 CausalMutation CLINVAR Mitochondrial aminoacyl-tRNA synthetases in human disease. 23433712 2013
dbSNP: rs587777583
rs587777583
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C4014660
Disease:
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 20
0.800 GeneticVariation UNIPROT Use of whole-exome sequencing to determine the genetic basis of multiple mitochondrial respiratory chain complex deficiencies. 25058219 2014
dbSNP: rs587777583
rs587777583
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C4014660
Disease:
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 20
0.800 GeneticVariation UNIPROT VARS2 and TARS2 mutations in patients with mitochondrial encephalomyopathies. 24827421 2014
dbSNP: rs587777584
rs587777584
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C4014660
Disease:
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 20
0.800 GeneticVariation UNIPROT VARS2 and TARS2 mutations in patients with mitochondrial encephalomyopathies. 24827421 2014
dbSNP: rs587777584
rs587777584
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C4014660
Disease:
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 20
0.800 GeneticVariation UNIPROT Use of whole-exome sequencing to determine the genetic basis of multiple mitochondrial respiratory chain complex deficiencies. 25058219 2014
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C4014660
Disease:
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 20
0.800 GeneticVariation UNIPROT Use of whole-exome sequencing to determine the genetic basis of multiple mitochondrial respiratory chain complex deficiencies. 25058219 2014
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C4014660
Disease:
COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 20
0.800 GeneticVariation UNIPROT VARS2 and TARS2 mutations in patients with mitochondrial encephalomyopathies. 24827421 2014
dbSNP: rs139515727
rs139515727
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 GeneticVariation CLINVAR Use of whole-exome sequencing to determine the genetic basis of multiple mitochondrial respiratory chain complex deficiencies. 25058219 2014
dbSNP: rs139515727
rs139515727
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 GeneticVariation CLINVAR VARS2 and TARS2 mutations in patients with mitochondrial encephalomyopathies. 24827421 2014
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 CausalMutation CLINVAR Use of whole-exome sequencing to determine the genetic basis of multiple mitochondrial respiratory chain complex deficiencies. 25058219 2014
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 CausalMutation CLINVAR VARS2 and TARS2 mutations in patients with mitochondrial encephalomyopathies. 24827421 2014
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0432072
Disease:
Dysmorphic features
T 0.700 CausalMutation CLINVAR Use of whole-exome sequencing to determine the genetic basis of multiple mitochondrial respiratory chain complex deficiencies. 25058219 2014
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0432072
Disease:
Dysmorphic features
T 0.700 CausalMutation CLINVAR VARS2 and TARS2 mutations in patients with mitochondrial encephalomyopathies. 24827421 2014
dbSNP: rs9394021
rs9394021
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0151517
Disease:
Complete atrioventricular block
0.010 GeneticVariation BEFREE Further linkage disequilibrium and conditional analysis identified two variants (rs9394021 and rs2517459) as new markers of genetic risk factors for CHB rather than the reported SNP from our previous study (rs2532932). 25404243 2015
dbSNP: rs139515727
rs139515727
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 GeneticVariation CLINVAR New perspective in diagnostics of mitochondrial disorders: two years' experience with whole-exome sequencing at a national paediatric centre. 27290639 2016
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0432072
Disease:
Dysmorphic features
T 0.700 CausalMutation CLINVAR New perspective in diagnostics of mitochondrial disorders: two years' experience with whole-exome sequencing at a national paediatric centre. 27290639 2016
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 CausalMutation CLINVAR New perspective in diagnostics of mitochondrial disorders: two years' experience with whole-exome sequencing at a national paediatric centre. 27290639 2016
dbSNP: rs114596632
rs114596632
Entrez Id: 2968;57176
Gene Symbol: GTF2H4;VARS2
GTF2H4;VARS2
CUI: C1306460
Disease:
Primary malignant neoplasm of lung
0.010 GeneticVariation BEFREE As a result, 14 SNPs had a significant odds ratio (OR) for lung cancer risk with P FDR < 0.05, of which rs3115672 in MSH5 (OR = 1.20, 95% CI = 1.14-1.27) and rs114596632 in GTF2H4 (OR = 1.19, 95% CI = 1.12-1.25) at 6q21.33 were the most statistically significant (P combined = 3.99×10(-11) and P combined = 5.40×10(-10), respectively). 27288692 2016
dbSNP: rs114596632
rs114596632
Entrez Id: 2968;57176
Gene Symbol: GTF2H4;VARS2
GTF2H4;VARS2
CUI: C0684249
Disease:
Carcinoma of lung
0.010 GeneticVariation BEFREE As a result, 14 SNPs had a significant odds ratio (OR) for lung cancer risk with P FDR < 0.05, of which rs3115672 in MSH5 (OR = 1.20, 95% CI = 1.14-1.27) and rs114596632 in GTF2H4 (OR = 1.19, 95% CI = 1.12-1.25) at 6q21.33 were the most statistically significant (P combined = 3.99×10(-11) and P combined = 5.40×10(-10), respectively). 27288692 2016
dbSNP: rs114596632
rs114596632
Entrez Id: 2968;57176
Gene Symbol: GTF2H4;VARS2
GTF2H4;VARS2
CUI: C0242379
Disease:
Malignant neoplasm of lung
0.010 GeneticVariation BEFREE As a result, 14 SNPs had a significant odds ratio (OR) for lung cancer risk with P FDR < 0.05, of which rs3115672 in MSH5 (OR = 1.20, 95% CI = 1.14-1.27) and rs114596632 in GTF2H4 (OR = 1.19, 95% CI = 1.12-1.25) at 6q21.33 were the most statistically significant (P combined = 3.99×10(-11) and P combined = 5.40×10(-10), respectively). 27288692 2016
dbSNP: rs114274879
rs114274879
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0149782
Disease:
Squamous cell carcinoma of lung
T 0.700 GeneticVariation GWASCAT Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes. 28604730 2017
dbSNP: rs139515727
rs139515727
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 GeneticVariation CLINVAR Neonatal encephalocardiomyopathy caused by mutations in VARS2. 27502409 2017
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0026650
Disease:
Movement Disorders
T 0.700 CausalMutation CLINVAR Neonatal encephalocardiomyopathy caused by mutations in VARS2. 27502409 2017
dbSNP: rs587777585
rs587777585
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0432072
Disease:
Dysmorphic features
T 0.700 CausalMutation CLINVAR Neonatal encephalocardiomyopathy caused by mutations in VARS2. 27502409 2017
dbSNP: rs1157637439
rs1157637439
Entrez Id: 57176
Gene Symbol: VARS2
VARS2
CUI: C0001125
Disease:
Acidosis, Lactic
0.010 GeneticVariation BEFREE We report the novel compound heterozygous pathogenic VARS2 mutations c.643 C > T (p. His215Tyr) and c.1354 A > G (p. Met452Val) in a female infant who presented with poor sucking at birth, poor activity, hyporeflexia, hypertonia, persistent pulmonary hypertension of newborn (PPHN), metabolic acidosis, severe lactic acidosis, expansion and hypertrophic cardiomyopathy. 30458719 2018