NPHS2, NPHS2 stomatin family member, podocin, 7827

N. diseases: 86; N. variants: 67
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C1567741
Disease:
Alport Syndrome
0.010 GeneticVariation BEFREE Individuals with TBMN and R229Q are carriers of the autosomal recessive forms of both Alport syndrome and familial focal segmental glomerulosclerosis (FSGS). 18726620 2008
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C3874381
Disease:
Childhood nephrotic syndrome
0.010 GeneticVariation BEFREE We calculated crude odds ratios and 95% confidence intervals of childhood nephrotic syndrome and focal segmental glomerulosclerosis associated with R229Q heterozygosity using data from five studies. 16481888 2006
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C2316810
Disease:
Chronic kidney disease stage 5
0.020 GeneticVariation BEFREE A family with three members homozygous for the NPHS2 p.R229Q variant is presented: a 37-year-old patient who was diagnosed with proteinuria at age 7 months, focal segmental glomerulosclerosis (FSGS) at age 20 years, and end-stage renal disease (ESRD) at age 33 years, his 59 year-old father and his 40 year-old brother, both unaffected with no proteinuria. 23800802 2013
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C2316810
Disease:
Chronic kidney disease stage 5
0.020 GeneticVariation BEFREE Our results offer more evidence that in patients with FH, NPHS2-R229Q predisposes to proteinuria and ESKD. 22228437 2012
dbSNP: rs74315342
rs74315342
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C2316810
Disease:
Chronic kidney disease stage 5
0.010 GeneticVariation BEFREE The most common podocin mutation, R138Q, is associated with early disease onset and rapid progression to end-stage renal disease. 29049388 2017
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C1611743
Disease:
Familial (FPAH)
0.020 GeneticVariation BEFREE Individuals with TBMN and R229Q are carriers of the autosomal recessive forms of both Alport syndrome and familial focal segmental glomerulosclerosis (FSGS). 18726620 2008
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C1611743
Disease:
Familial (FPAH)
0.020 GeneticVariation BEFREE To further define the implication of R229Q, a familial case was characterized with two nephrotic siblings presenting the association of the R229Q with A297V mutation that were inherited from healthy mother and father, respectively. 12707396 2003
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C1305904
Disease:
Familial hematuria
0.010 GeneticVariation BEFREE NPHS2-R229Q was screened in a Cypriot FH cohort. 22228437 2012
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE Identification of R229Q mutations may be of clinical importance, as NPHS2-associated disease appears to define a subgroup of FSGS patients unresponsive to corticosteroids. 12464671 2002
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE In conclusion, our meta-analysis suggests that for adult-onset disease (onset age > 18), the homozygous variant could be a potential predictor of hereditary nephrotic syndrome and that the p.R229Q allele cannot currently be considered a risk factor for predicting FSGS. 24715228 2014
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE Individuals with TBMN and R229Q are carriers of the autosomal recessive forms of both Alport syndrome and familial focal segmental glomerulosclerosis (FSGS). 18726620 2008
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE The common variant R229Q of podocin, recently associated with late-onset focal segmental glomerulosclerosis, had an overall allelic frequency of 4.2% versus 2.5% in controls. 12707396 2003
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE In this paper, we present the currently known pathogenic and benign associations, and show that a rare p.R229Q association can be considered pathogenic if the variant in trans meets the following criteria; it affects the 270-351 residues and alters but does not disrupt the oligomerization, its p.R229Q association is found in a family with slowly progressing focal segmental glomerulosclerosis, but is expected to be rare in the general population (<1:10<sup>6</sup> ). 30260545 2018
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE Nevertheless, the rare association of FSGS to a PAX2 mutation may reflect the modifier effect of p.R229Q in the homozygous state. 23800802 2013
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE The R229Q variant is not associated with focal segmental glomerulosclerosis in the US population of African descent. 16481888 2006
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE The podocin mutation R229Q may play a role in the pathogenesis of FSGS and in early recurrence after transplantation, but does not allow accurate prediction of recurrence or the associated potential for prevention. 23982418 2013
dbSNP: rs61747728
rs61747728
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.090 GeneticVariation BEFREE To date, very few cases with adult-onset focal segmental glomerulosclerosis (FSGS) carrying NPHS2 variants have been described, all of them being compound heterozygous for the p.R229Q variant and one pathogenic mutation. 20947785 2011
dbSNP: rs530318579
rs530318579
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.010 GeneticVariation BEFREE A compound heterozygous podocin mutation was identified in our FSGS patient, leading to a truncated (podocin (V165X)) and a missense mutant protein (podocin (R168H)), respectively. 19674119 2009
dbSNP: rs74315342
rs74315342
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.010 GeneticVariation BEFREE R138Q carriers were more frequent among FSGS cases relative to controls (OR = 4.9, P = 0.06), but heterozygosity for the other four missense mutations was equally distributed among FSGS cases and controls. 17942957 2007
dbSNP: rs74315344
rs74315344
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.010 GeneticVariation BEFREE The prevalence of p.P20L polymorphism was not significantly different among the groups (6 % in FSGS patients, 1.8 % in IGAN patients, 1 % in the control group). 22578956 2012
dbSNP: rs748203170
rs748203170
Entrez Id: 7827;126859
Gene Symbol: NPHS2;AXDND1
NPHS2;AXDND1
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.010 GeneticVariation BEFREE Eight of these (p.R138Q, p.V180M, p.R229Q, p.E237Q, p.A242V, p.A284V, p.L327F and the frameshift 855-856 delAA) are alleles previously reported to cause FSGS in either the homozygous or compound heterozygous states, while the remaining 7 (p.R10T, p.V127W, p.Q215X, p.T232I, p.L270F, p.L312V and the frameshift 397delA) are novel alleles that have not been demonstrated previously. 18823551 2008
dbSNP: rs920479356
rs920479356
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C0017668
Disease:
Focal glomerulosclerosis
0.010 GeneticVariation BEFREE Eight of these (p.R138Q, p.V180M, p.R229Q, p.E237Q, p.A242V, p.A284V, p.L327F and the frameshift 855-856 delAA) are alleles previously reported to cause FSGS in either the homozygous or compound heterozygous states, while the remaining 7 (p.R10T, p.V127W, p.Q215X, p.T232I, p.L270F, p.L312V and the frameshift 397delA) are novel alleles that have not been demonstrated previously. 18823551 2008
dbSNP: rs530318579
rs530318579
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C4049702
Disease:
Focal Segmental Glomerulosclerosis, Not Otherwise Specified
0.010 GeneticVariation BEFREE A compound heterozygous podocin mutation was identified in our FSGS patient, leading to a truncated (podocin (V165X)) and a missense mutant protein (podocin (R168H)), respectively. 19674119 2009
dbSNP: rs74315344
rs74315344
Entrez Id: 7827
Gene Symbol: NPHS2
NPHS2
CUI: C4049702
Disease:
Focal Segmental Glomerulosclerosis, Not Otherwise Specified
0.010 GeneticVariation BEFREE The prevalence of p.P20L polymorphism was not significantly different among the groups (6 % in FSGS patients, 1.8 % in IGAN patients, 1 % in the control group). 22578956 2012
dbSNP: rs200482683
rs200482683
Entrez Id: 7827;126859
Gene Symbol: NPHS2;AXDND1
NPHS2;AXDND1
CUI: C0239981
Disease:
Hypoalbuminemia
0.010 GeneticVariation BEFREE The second, a 31-year-old woman-compound heterozygous for p.V290M and p.R138Q-was first detected with hypoalbuminemia (<30 g/l) and edema at the age of 24.3 and 27.5 years, respectively. 23242530 2013