Source: ALL
Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation UNIPROT
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation UNIPROT
Lupus Erythematosus, Systemic
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
0.900 GeneticVariation UNIPROT
VITILIGO-ASSOCIATED MULTIPLE AUTOIMMUNE DISEASE SUSCEPTIBILITY 6
0.700 GeneticVariation UNIPROT
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE A functional polymorphism (1858C/T) in the PTPN22 gene is linked and associated with type I diabetes in multiplex families. 15526003 2004
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE Recently, it has been reported that a single nucleotide polymorphism (SNP), 1858C>T, in the gene PTPN22, encoding Arg620Trp in the lymphoid protein tyrosine phosphatase (LYP), which has been shown to be a negative regulator of T-cell activation, is associated with an increased risk of type 1 diabetes. 15504986 2004
Lupus Erythematosus, Systemic
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
0.900 GeneticVariation BEFREE The R620W SNP was associated with SLE (genotypic P=.00009), with estimated minor (T) allele frequencies of 12.67% in SLE cases and 8.64% in controls. 15273934 2004
Encephalitis, St. Louis
CUI: C0014060
Disease: Encephalitis, St. Louis
0.030 GeneticVariation BEFREE Genetic association of the R620W polymorphism of protein tyrosine phosphatase PTPN22 with human SLE. 15273934 2004
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE A missense single-nucleotide polymorphism (SNP) within this gene (rs2476601) has recently been associated with 4 autoimmune diseases: rheumatoid arthritis (RA), systemic lupus erythematosus, autoimmune thyroid disease, and type 1 diabetes mellitus, all of which are T cell-mediated and associated with the elaboration of autoantibody. 15934099 2005
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE The PTPN22 polymorphism 1858 C/T may be involved in the pathogenesis of type 1 diabetes mellitus by a sex-specific mechanism that contributes to susceptibility in females. 16322396 2005
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE In this study, a set of 341 white, multiplex T1D families were genotyped for the C1858T single nucleotide polymorphism of PTPN22, and transmission disequilibrium test analysis revealed significant association (p = 0.005) of the T allele with T1D. 15620463 2005
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE We have genotyped 396 type 1 diabetic patients and 1,178 control subjects of Caucasian descent from north central Florida and report a strong association between type 1 diabetes and a polymorphism (R620W) in the PTPN22 gene. 15734872 2005
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE We report that a recently described functional single-nucleotide polymorphism (rs2476601, encoding R620W) in the intracellular tyrosine phosphatase (PTPN22) confers risk of four separate autoimmune phenotypes in these families: T1D, RA, SLE, and Hashimoto thyroiditis. 15719322 2005
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE A functional single nucleotide polymorphism, 1858C>T, in the PTPN22 gene, encoding a tyrosine phosphatase, has been reported to be associated with type I diabetes and some other autoimmune diseases. 15759012 2005
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE Additional analyses identified two SNPs on a single common haplotype that are associated with RA independent of R620W, suggesting that R620W and at least one additional variant in the PTPN22 gene region influence RA susceptibility. 16175503 2005
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE A missense single-nucleotide polymorphism (SNP) within this gene (rs2476601) has recently been associated with 4 autoimmune diseases: rheumatoid arthritis (RA), systemic lupus erythematosus, autoimmune thyroid disease, and type 1 diabetes mellitus, all of which are T cell-mediated and associated with the elaboration of autoantibody. 15934099 2005
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE Association of the lymphoid tyrosine phosphatase R620W variant with rheumatoid arthritis, but not Crohn's disease, in Canadian populations. 15986374 2005
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE To assess the possible association between the PTPN22 gene 1858C-->T polymorphism and the predisposition and clinical expression of 2 systemic autoimmune diseases, rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE). 15641066 2005
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE There was a strong dose effect on disease risk; two copies of the PTPN22 R620W allele more than doubles the risk for RF positive RA (OR=4.57, 95% CI 2.35-8.89). 15674368 2005
Lupus Erythematosus, Systemic
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
0.900 GeneticVariation BEFREE In addition, PTPN22 1858 C/T and T/T genotypes were present at a significantly higher frequency in SLE patients than in controls (P = 0.02, OR 1.55 [95% CI 1.05-2.29]). 15641066 2005
Autoimmune Diseases
CUI: C0004364
Disease: Autoimmune Diseases
0.900 GeneticVariation BEFREE The R620W polymorphism of the PTPN22 gene is not a major risk allele for SLE susceptibility in our sample of Caucasian individuals from northern America, the UK, or Finland, but it appears to be a risk factor for the concurrent autoimmune diseases of autoimmune thyroid disease and SLE. 16052563 2005
Autoimmune Diseases
CUI: C0004364
Disease: Autoimmune Diseases
0.900 GeneticVariation BEFREE Recently, the association of a coding variant of the PTPN22 gene-R620W(1858C>T) with a number of autoimmune diseases has been described. 15875058 2005
Autoimmune Diseases
CUI: C0004364
Disease: Autoimmune Diseases
0.900 GeneticVariation BEFREE To assess the possible association between the PTPN22 gene 1858C-->T polymorphism and the predisposition and clinical expression of 2 systemic autoimmune diseases, rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE). 15641066 2005
Autoimmune Diseases
CUI: C0004364
Disease: Autoimmune Diseases
0.900 GeneticVariation BEFREE The results indicate that the LYP missense R620W polymorphism may have an influence on the development of generalised vitiligo and provide further evidence for autoimmunity as an aetiological factor with respect to this disease. 16015369 2005
Autoimmune Diseases
CUI: C0004364
Disease: Autoimmune Diseases
0.900 GeneticVariation BEFREE A functional variant (R620W) of the intracellular protein tyrosine phosphatase N22 (PTPN22) has now been conclusively shown to confer approximately two-fold risk for seropositive RA as well as several other autoimmune disorders. 15790351 2005