Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7157
Gene Symbol: TP53
TP53
High-Grade Squamous Intraepithelial Lesions
0.090 Biomarker BEFREE Immunoreactivity for p53 was seen in 83% of the benign and low-grade squamous intraepithelial lesions (SILs), in 73% of the high-grade SILs, and in 86% of the infiltrating squamous carcinomas. 8244324

1993

Entrez Id: 6347
Gene Symbol: CCL2
CCL2
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE Although preliminary, our observations lend support to the suggestion that the experimental model of transcriptional regulation and exclusion of either HPV E6/E7 or MCP-1 expression is especially pertinent to high-grade SIL, whereas in most SCCs, other environmental factors may influence this relationship. 8909236

1996

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
High-Grade Squamous Intraepithelial Lesions
0.030 Biomarker BEFREE HLA DRB1*13 was associated with a decreased risk of HPV/LSIL (RR = 0.78; 95% CI = 0.51-1.2) and HSIL (RR = 0.63; 95% CI = 0.30-1.3). 9829713

1998

Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
High-Grade Squamous Intraepithelial Lesions
0.030 Biomarker BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713

1998

Entrez Id: 2775
Gene Symbol: GNAO1
GNAO1
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713

1998

Entrez Id: 3120
Gene Symbol: HLA-DQB2
HLA-DQB2
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713

1998

Entrez Id: 5111
Gene Symbol: PCNA
PCNA
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE Cyclin E staining was nuclear in distribution, and the frequency of positive staining, ie., moderate or strong intensity, was significantly higher (P < .001 for cyclin E staining vs. diagnosis) in all of the lesional epithelia (92.3, 51.6, and 50% of low-grade and high-grade SILs and carcinomas, respectively) compared with nonlesional epithelium (5.9%). 9872657

1998

Entrez Id: 2272
Gene Symbol: FHIT
FHIT
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE Moreover, absent or reduced Fhit protein is observed at a significantly higher frequency in HSILs associated with progression to invasive cancer than in HSILs with unknown risk for progression (P = 0.012). 10999736

2000

Entrez Id: 6490
Gene Symbol: PMEL
PMEL
High-Grade Squamous Intraepithelial Lesions
0.040 GeneticVariation BEFREE AAV appears to interact with HPV to reduce SIL risk; relative to the HPV-/AAV+ exposure, the respective aORs for HSIL and HPV+/AAV-, HPV+/AAV+, and HPV-/AAV+ were 17.0, 6.9, and 3.5. 11263951

2001

Entrez Id: 6491
Gene Symbol: STIL
STIL
High-Grade Squamous Intraepithelial Lesions
0.040 GeneticVariation BEFREE AAV appears to interact with HPV to reduce SIL risk; relative to the HPV-/AAV+ exposure, the respective aORs for HSIL and HPV+/AAV-, HPV+/AAV+, and HPV-/AAV+ were 17.0, 6.9, and 3.5. 11263951

2001

Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
High-Grade Squamous Intraepithelial Lesions
0.100 Biomarker BEFREE Positive scores for Ki-67, cyclin E, and p16 were seen in 68.4%, 96.7%, and 100% of LSILs and 94.7%, 91.6%, and 100% of HSILs, respectively. 11420459

2001

Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
High-Grade Squamous Intraepithelial Lesions
0.100 Biomarker BEFREE Positive scores for Ki-67, cyclin E, and p16 were seen in 68.4%, 96.7%, and 100% of LSILs and 94.7%, 91.6%, and 100% of HSILs, respectively. 11420459

2001

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
High-Grade Squamous Intraepithelial Lesions
0.030 GeneticVariation BEFREE Compared with women who were HPV negative, women with HLA-DRB1*1301 were associated with decreased risk for cancer/HSILs (odds ratio [OR], 0.4; 95% confidence interval [CI], 0.2-0.7) and for LSILs/HPV (OR, 0.6; 95% CI, 0.3-0.9). 11679920

2001

Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
High-Grade Squamous Intraepithelial Lesions
0.030 Biomarker BEFREE Women with both HLA-B*07 and HLA-DQB1*0302 had an 8.2-fold increased risk for cancer/HSILs (95% CI, 1.8-37.2) and a 5.3-fold increased risk for LSILs/HPV (95% CI, 1.2-23.7). 11679920

2001

Entrez Id: 7157
Gene Symbol: TP53
TP53
High-Grade Squamous Intraepithelial Lesions
0.090 AlteredExpression BEFREE We compared the clinical and histopathological findings, immunohistochemical expression of Ki-67 and p53 protein, and HPV typing of 5 cases of PIM with SM (n=9), HSIL (n=6), and PSC (n=4) to know the helpful features for the differential diagnosis. 11748359

2001

Entrez Id: 4313
Gene Symbol: MMP2
MMP2
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE MMP-2 expression, when focally observed in high-grade squamous intraepithelial lesions of the cervix, may indicate tumor areas with an increased risk for invasive growth. 11812078

2002

Entrez Id: 7157
Gene Symbol: TP53
TP53
High-Grade Squamous Intraepithelial Lesions
0.090 GeneticVariation BEFREE In this study we investigated the relationship between the development of either HSILs (high-grade squamous intraepithelial lesions) or invasive cancers of the uterine cervix and the p53 codon 72 polymorphisms consisting of arginine (Arg)- or proline (Pro)-encoded allele in Japanese populations. 12168100

2002

Entrez Id: 412
Gene Symbol: STS
STS
High-Grade Squamous Intraepithelial Lesions
0.100 Biomarker BEFREE The cumulative incidence for a Pap test interpreted as atypical squamous cells or more severe (>or= ASC) was 16.8% (95% confidence interval [CI] = 15.0-18.6%), 6.4% (95% CI = 5.2-7.6%) for low-grade squamous intraepithelial lesions or more severe, and 2.2% (95% CI = 1.5-2.9%) for high-grade squamous intraepithelial lesions or more severe. 12412168

2002

Entrez Id: 29108
Gene Symbol: PYCARD
PYCARD
High-Grade Squamous Intraepithelial Lesions
0.100 Biomarker BEFREE The cumulative incidence for a Pap test interpreted as atypical squamous cells or more severe (>or= ASC) was 16.8% (95% confidence interval [CI] = 15.0-18.6%), 6.4% (95% CI = 5.2-7.6%) for low-grade squamous intraepithelial lesions or more severe, and 2.2% (95% CI = 1.5-2.9%) for high-grade squamous intraepithelial lesions or more severe. 12412168

2002

Entrez Id: 57026
Gene Symbol: PDXP
PDXP
High-Grade Squamous Intraepithelial Lesions
0.040 GeneticVariation BEFREE A prospective study was conducted on 205 patients who underwent conization for high-grade squamous intraepithelial lesion (CIN 2 or 3). 13678729

2003

Entrez Id: 3381
Gene Symbol: IBSP
IBSP
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE The abundance of BSP protein was significantly higher in invasive SCCs and high grade SILs than in normal cervix tissue samples and low grade SILs, which showed no or a low level of anti-BSP immunoreactivity. 14506948

2003

Entrez Id: 7337
Gene Symbol: UBE3A
UBE3A
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE These results suggest the possibility that degradation by HPV E6 is one of the causal roles for the progressive decrease of hScrib expression during the disease progression from low-grade squamous intraepithelial lesions to H-SIL, and a cooperative role of downregulation of hScrib mRNA expression and ubiquitin-mediated degradation of hScrib by E6 and E6AP led to the complete decrease of hScrib expression during the process of carcinogenesis from H-SIL to invasive cancer. 14710229

2004

Entrez Id: 6490
Gene Symbol: PMEL
PMEL
High-Grade Squamous Intraepithelial Lesions
0.040 GeneticVariation BEFREE Depending on the end-point (histologic/cyto-logic), the sensitivity range of HPV testing for significant cervical disease (high-grade squamous intraepithelial lesion [SIL], adenocarcinoma in situ [ACIS], invasive carcinoma) was 83% with a specificity range of 78% to 82%, a positive predictive value of 57% to 61%, and a negative predictive value of 91% to 95%. 14750245

2004

Entrez Id: 6491
Gene Symbol: STIL
STIL
High-Grade Squamous Intraepithelial Lesions
0.040 GeneticVariation BEFREE Depending on the end-point (histologic/cyto-logic), the sensitivity range of HPV testing for significant cervical disease (high-grade squamous intraepithelial lesion [SIL], adenocarcinoma in situ [ACIS], invasive carcinoma) was 83% with a specificity range of 78% to 82%, a positive predictive value of 57% to 61%, and a negative predictive value of 91% to 95%. 14750245

2004

Entrez Id: 5682
Gene Symbol: PSMA1
PSMA1
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE Digene HC II test was used to identify HR- and/or low-risk (LR-)HPV infections in cervical swabs of 275 women attending our clinic for routine cytological screening and/or colposcopy because of an abnormal Pap smear comprising low-grade squamous intraepithelial lesions (LGSIL) and high-grade SIL (HGSIL). 14984955

2004