Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 151647
Gene Symbol: TAFA4
TAFA4
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE (4) Though the sensitivity of FAM19A4 methylation test was inferior to that of cytology and FAM19A4 combining with HPV16/18 genotyping, but showed the best specificity with 81.44% both for detection HSIL alone and ≥ HSIL, with favorable youden index (YI) and area under curve (AUC). 30486875

2018

Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE High-grade squamous intraepithelial lesions exhibited higher VEGF mRNA levels than low-grade lesions (P=0.039). 15797633

2005

Entrez Id: 4313
Gene Symbol: MMP2
MMP2
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE MMP-2 expression, when focally observed in high-grade squamous intraepithelial lesions of the cervix, may indicate tumor areas with an increased risk for invasive growth. 11812078

2002

Entrez Id: 3481
Gene Symbol: IGF2
IGF2
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE IGF-II mRNA levels were significantly lower in LSIL than in control group (median [arbitrary units]: 0.38 vs. 2.42, P=0.006) but its expression in HSIL and cervical cancer was similar to the one observed in controls. 17709267

2007

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
High-Grade Squamous Intraepithelial Lesions
0.030 GeneticVariation BEFREE HLA-DRB1*0403 allele was also associated with a significantly increased risk of high-grade squamous intraepithelial lesion or cancer, showing a multivariate-adjusted hazard ratio (95% CI) of 18.1 (2.6-128.5). 21692064

2012

Entrez Id: 573
Gene Symbol: BAG1
BAG1
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE BAG-1 expression levels were significantly different between LSILs and HSILs (p = 0,014) and between LSILs and SCCs (p = 0,014). 22454210

2012

Entrez Id: 3822
Gene Symbol: KLRC2
KLRC2
High-Grade Squamous Intraepithelial Lesions
0.010 GeneticVariation BEFREE NKG2C genotype distributions in LSIL were WT/WT: 69.2%, WT/null: 26.2% and null/null: 4.6%; whereas in HSIL were WT/WT: 65.4%, WT/null: 28.5% and null/null: 6.1% and no statistical differences were observed (LSIL vs. HSIL p=0.541; LSIL vs. controls p=0.230; HSIL vs. controls p=0.624) nor when restricting to HPV positive, HR-HPV nor co-infection. 23911737

2013

Entrez Id: 7153
Gene Symbol: TOP2A
TOP2A
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE TOP2A was the most sensitive (97%) biomarker for the detection of HSIL and CDKN2A/p16 the most specific (78%). 25189639

2015

Entrez Id: 406885
Gene Symbol: MIRLET7C
MIRLET7C
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE Let-7c expression was evaluated by quantitative reverse transcription-polymerase chain reaction in 73 women with normal or cervical intraepithelial lesions: normal epithelium with (n = 17) and without (n = 21) HPV infection; low-grade squamous intraepithelial lesions (n = 14); and high-grade squamous intraepithelial lesions (n = 21). 26063583

2015

Entrez Id: 7535
Gene Symbol: ZAP70
ZAP70
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE ZAP70 was found to be hypermethylated in 100% of OSCC and HG-SIL and in 28.6% of LG-SIL. 26302938

2015

Entrez Id: 2812
Gene Symbol: GP1BB
GP1BB
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE GP1BB hypomethylation was detected in 90.9% OSCC and HG-SIL and in 37.5% of LG-SIL. 26302938

2015

Entrez Id: 116
Gene Symbol: ADCYAP1
ADCYAP1
High-Grade Squamous Intraepithelial Lesions
0.010 PosttranslationalModification BEFREE ADCYAP1 and PAX1 also trended toward elevated methylation levels in HSIL samples, although the levels were much lower than those in cancer cells. 26768780

2016

Entrez Id: 406986
Gene Symbol: MIR203A
MIR203A
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE miR-203 and ΔNp63 displayed a similar expression pattern across cervical tissues and both targets showed statistically significant differences between low-grade squamous intraepithelial lesion (LSIL) x high-grade squamous intraepithelial lesion (HSIL); HSIL x Cancer. 27466497

2016

Entrez Id: 190
Gene Symbol: NR0B1
NR0B1
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE DAX1 expressed a gradual increase from normal cervix to high-grade squamous intraepithelial lesions, and consequently to cervical cancer. 29497051

2018

Entrez Id: 6664
Gene Symbol: SOX11
SOX11
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE SOX11 was highly expressed in normal cervix (NC) and precancerous low‑grade squamous intraepithelial lesions, but weakly expressed or virtually absent in precancerous high‑grade squamous intraepithelial lesions and CC, which is consistent with the result of the western blot analysis. 30720133

2019

Entrez Id: 4837
Gene Symbol: NNMT
NNMT
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE NNMT expression in benign tissue was significantly lower than in low-grade squamous intraepithelial lesion and high-grade squamous intraepithelial lesion. 31033801

2019

Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
High-Grade Squamous Intraepithelial Lesions
0.030 Biomarker BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713

1998

Entrez Id: 2775
Gene Symbol: GNAO1
GNAO1
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713

1998

Entrez Id: 3120
Gene Symbol: HLA-DQB2
HLA-DQB2
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE HLA DQB1*0302 was associated with a 1.5-fold increased risk of HPV/LSIL (95% CI = 0.94-2.4) and a 1.7-fold increased risk of HSIL (95% CI = 0.84-3.5). 9829713

1998

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
High-Grade Squamous Intraepithelial Lesions
0.030 Biomarker BEFREE HLA DRB1*13 was associated with a decreased risk of HPV/LSIL (RR = 0.78; 95% CI = 0.51-1.2) and HSIL (RR = 0.63; 95% CI = 0.30-1.3). 9829713

1998

Entrez Id: 5111
Gene Symbol: PCNA
PCNA
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE Cyclin E staining was nuclear in distribution, and the frequency of positive staining, ie., moderate or strong intensity, was significantly higher (P < .001 for cyclin E staining vs. diagnosis) in all of the lesional epithelia (92.3, 51.6, and 50% of low-grade and high-grade SILs and carcinomas, respectively) compared with nonlesional epithelium (5.9%). 9872657

1998

Entrez Id: 3397
Gene Symbol: ID1
ID1
High-Grade Squamous Intraepithelial Lesions
0.010 AlteredExpression BEFREE A gradual increase of Id-1 protein expression associated with cervical cancer progression was detected (4%, 16%, 50% and 75.9% in normal, low squamous intraepithelial lesion (LSIL), high squamous intraepithelial lesion (HSIL) and cancer tissue, respectively, p<0.001). 19359031

2009

Entrez Id: 5777
Gene Symbol: PTPN6
PTPN6
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE A multiplex, nested, methylation-specific polymerase chain reaction approach was used to examine promoter methylation of 12 genes (CDH1, DAPK, GSTP1, HIC-1, HIN-1, hMLH1, MGMT, p16, RAR-beta, RASSF1A, SHP-1, and Twist) in biopsy-proven SCC (n=69), high-grade SIL (HSIL, n=67), low-grade SIL (LSIL, n=32), and negative (n=41) liquid-based cytology samples. 19836067

2010

Entrez Id: 8431
Gene Symbol: NR0B2
NR0B2
High-Grade Squamous Intraepithelial Lesions
0.010 Biomarker BEFREE A multiplex, nested, methylation-specific polymerase chain reaction approach was used to examine promoter methylation of 12 genes (CDH1, DAPK, GSTP1, HIC-1, HIN-1, hMLH1, MGMT, p16, RAR-beta, RASSF1A, SHP-1, and Twist) in biopsy-proven SCC (n=69), high-grade SIL (HSIL, n=67), low-grade SIL (LSIL, n=32), and negative (n=41) liquid-based cytology samples. 19836067

2010

Entrez Id: 57026
Gene Symbol: PDXP
PDXP
High-Grade Squamous Intraepithelial Lesions
0.040 GeneticVariation BEFREE A prospective study was conducted on 205 patients who underwent conization for high-grade squamous intraepithelial lesion (CIN 2 or 3). 13678729

2003