Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 AlteredExpression BEFREE WJHL could significantly improve clinical arthritic conditions; inhibit bone erosion and osteophyte formation in joints; decrease expression of proinflammatory cytokines (TNF-α, IL-1β, IL-6, and IL-17); reduce protein expression levels of JAK2, p-JAK2, STAT3, p-STAT3 and gene expression levels of JAK2, STAT3, IL-17A, RORγt mRNA; elevate osteoprotegerin and Foxp3 mRNA levels and lower Th17 cell proportions in splenocytes. 28562338

2017

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 AlteredExpression BEFREE In LVSmad7-injected joints, there were lower arthritis and histological scores with less synovitis, synovial hyperplasia and erosion on cartilage and bone as well as reduced IL-17 and TNF expression levels in comparison with other control groups. 27731365

2016

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE Loss of FAK reduced invasion in murine arthritic synovial fibroblasts, but not migration or TNFα-induced arthritis severity and joint erosions. 25280866

2014

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 AlteredExpression BEFREE To identify how the gp130-signaling cytokine oncostatin M (OSM), acting alone or in concert with IL-1β or TNFα, affects synovial fibroblast expression of genes relevant to inflammation and bone erosion in inflammatory arthritis. 24767864

2014

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE WIF-1 deficiency partially protected TNF-transgenic mice against bone erosion and loss of trabecular bone, probably as a result of less osteoclast activity. 23784913

2013

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 AlteredExpression BEFREE Local bone erosion and reduction in TNFα levels were seen for CORM-3 on day 50 and for alendronate on day 36. 22644323

2012

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE Moreover, stratified analyses indicated statistically significant associations between HLA-DRB1*04 allele and anti-cyclic peptides antibodies positivity (ACPA(+)) and rheumatoid factor positivity (RF(+); p(c)=0.03, for both subgroups), HLA-DRBI*10 and ACPA(+) and the presence of another autoimmune disease (p(c)=0.05 and p(c)=0.007, respectively), and HLA-DRB1*04:05 and RF(+) and erosion (p(c)=0.005 and p(c)=0.049; respectively). 22349877

2012

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE Subsequently, a meta-analysis, including all publically available data, was performed to further test the association between joint erosions and the TNFA polymorphism. 23217265

2012

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE The results of this study demonstrate the association of the TNF-α-308 G allele and GG homozygous genotype with susceptibility to RA and the A allele with the presence of erosion in the Egyptian patients. 21806780

2011

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE The value of HLA-DRB1 shared epitope, -308 tumor necrosis factor-alpha gene promoter polymorphism, rheumatoid factor, anti-citrullinated peptide antibodies, and early erosions for predicting radiological outcome in recent-onset rheumatoid arthritis. 19411391

2009

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE To study the value of HLA-DRB1 shared epitope (SE), -308 tumor necrosis factor-alpha (TNF-alpha) gene promoter polymorphism, rheumatoid factor (RF), anti-citrullinated peptide antibodies (anti-CCP), and baseline erosions for predicting radiological outcome at 1 year in patients with recent-onset rheumatoid arthritis (RA). 19411391

2009

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE In contrast, TNF induced robust osteoclast formation in vivo in mice lacking RANKL or RANK when the mice also lacked NF-kappaB p100, and TNF-Tg mice lacking NF-kappaB p100 had more severe joint erosion and inflammation than did TNF-Tg littermates. 19770515

2009

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE Rheumatoid factor positivity and bone erosion were more frequent in patients with at least one copy of DRB1*0405. 17309132

2007

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE Antibodies against cyclic citrullinated peptide are associated with the DRB1 shared epitope and predict joint erosion in rheumatoid arthritis. 16728439

2007

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE To assess the relationship between the HLA-DRB1 genes with disease severity as assessed by radiological erosions in Malaysian patients with rheumatoid arthritis (RA). 17453717

2007

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE The TNF -238A allele was more frequent in the psoriatic arthritis JIA subgroup compared to healthy controls as well as to non-psoriatic JIA patients (p < 0.001, chi-square-test) and was associated with the more frequent occurrence of joint erosion (p < 0.05, chi-square-test). 16539828

2006

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE Using a weighted least-squares regression analysis, patients with the -308 TNFA AA plus AG genotypes (n=49) had significantly higher rates of progression in erosion scores (median 0.84 versus 0.48 units/year), joint space narrowing (JSN) scores (0.42 versus 0.04), and total Sharp scores (1.70 versus 0.61) compared with patients with the TNFA GG genotype (n=140). 16572445

2006

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE To examine the association between both individual TNFalpha single nucleotide polymorphisms (SNPs) and haplotypes with the development and severity of erosions by 5 years in patients with inflammatory polyarthritis (IP). 14962963

2004

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE Included were studies in which molecular typing of HLA-DRB1 alleles was performed and in which the presence or absence of bony erosions was reported. 14872482

2004

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE HLA-DRB1* alleles and temporomandibular joint erosion in patients with various rheumatic diseases. 15124939

2004

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE HLA-DRB1 alleles did not show any association with seropositivity, extra-articular involvement, radiological erosion, or functional index. 14690140

2003

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE Furthermore carriage of TNF +489A was not associated with the presence of radiological erosions, rheumatoid nodules or rheumatoid factor. 12508775

2003

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 Biomarker BEFREE These data reveal that TNF-dependent bone erosion is mediated by osteoclasts and that the absence of osteoclasts alters TNF-mediated arthritis from a destructive to a nondestructive arthritis. 12438440

2002

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE TNF microsatellite alleles were not related to the prevalences of bone erosion, rheumatoid nodule, sicca syndrome, pulmonary fibrosis, and seropositivity of rheumatoid factor (RF) in patients with RA. 11947922

2002

Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
CUI: C0333307
Disease: Superficial ulcer
Superficial ulcer
0.100 GeneticVariation BEFREE To assess the association between HLA-DRB1 alleles and shoulder destruction due to rheumatoid arthritis (RA) in Japanese, we typed for HLA-DRB1 alleles in 100 Japanese RA patients who could be classified into 5 groups: non-progressive (N) with normal radiographs; erosive (E) showing marginal erosion but no collapse; collapse (C) showing subchondral cysts followed by collapse; arthrosis-like (A) showing osteoarthrotic features; and the mutilating (M) showing mutilating bone destruction. 9572642

1998