Source: BEFREE

Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1001179
rs1001179
CAT
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE Furthermore, we did not find any statistically significant differences in rates between CAT rs1001179 and CTSD rs17571 genotypes and AD controlling for APOE e4 allele status. 18248894

2008

dbSNP: rs10046
rs10046
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE In addition, our results demonstrated that homozygous TT genotype in rs10046, dominant AA and AG genotypes in rs767199, homozygous TT genotype in rs727479, and dominant TT and TA genotypes in rs1143704 might be the susceptibility genotypes for AD, while no associations were observed between rs1065778, rs1062033, rs1008805, and rs700519 polymorphisms and AD susceptibility. 31278540

2019

dbSNP: rs10051644
rs10051644
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE Haplotype analysis indicated that the T-A-C-A-T-C-C and T-G-C-A-T-C-C haplotypes in the southwestern cohort and the T-G-C-G-C-T-C haplotype in the eastern cohort, consisting of rs10051644, rs6869634, rs3797617, rs3756577, rs4958445, rs10515639 and rs6881743, showed a significant association with AD (<i>P</i> = 0.037, <i>P</i> = 0.026 and <i>P</i> = 0.045, respectively). 31031618

2019

dbSNP: rs10085109
rs10085109
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE Of the four SNPs, rs10085109 in the FLT4 gene was only significantly associated with the AD phenotype in both initial and replication samples. 23490417

2013

dbSNP: rs1008805
rs1008805
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE Association between rs10046, rs1143704, rs767199, rs727479, rs1065778, rs1062033, rs1008805, and rs700519 polymorphisms in aromatase (CYP19A1) gene and Alzheimer's disease risk: a systematic review and meta-analysis involving 11,051 subjects. 31278540

2019

dbSNP: rs10097505
rs10097505
ARC
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE Further luciferase assay, data mining, and integrative analyses revealed that the AD-risk genotype AA of rs10097505 was associated with an increased Arc mRNA expression and an elevated Aβ level. 28108859

2018

dbSNP: rs1010159
rs1010159
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.040 GeneticVariation BEFREE In the MCI cohort, rs1010159 was associated with conversion to AD (HR = 1.56, p = 0.002). 25881907

2015

dbSNP: rs1010159
rs1010159
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.040 GeneticVariation BEFREE We conducted a study of 7 single nucleotide polymorphisms (SNPs), rs668387, rs689021, rs641120, rs1699102, rs3824968, rs2282649, and rs1010159, in the SORL1 gene that were associated to AD in previous studies. 19584446

2009

dbSNP: rs1010159
rs1010159
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.040 GeneticVariation BEFREE Analysis showed, (i) Increased risk between the single nucleotidepolymorphisms (rs641120, rs1010159) and Alzheimer's disease susceptibility inAsian populations, (ii) Single nucleotide polymorphism rs689021 was associatedwith decreased risk in Caucasians, and (iii) Single nucleotide polymorphismrs641120 was detected as a decreased risk in both populations. 29036834

2018

dbSNP: rs1010159
rs1010159
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.040 GeneticVariation BEFREE In the present study we investigated the association of SORL1 gene variants (rs2070045 (SNP19), SORL1-18ex26 (SNP21), rs3824968 (SNP23), rs1010159 (SNP25)) with AD risk by using Cox proportional hazard model and Kaplan-Meier survival analysis in 349 AD patients and 483 controls, recruited from a multicenter study of the German Competence Network Dementias. 19368828

2009

dbSNP: rs10137185
rs10137185
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE A separate SNP (rs10137185) was associated with decreased risk for AD in women who identified themselves as Black (OR 0.6, 95% CI = 0.4-0.9). 24326520

2014

dbSNP: rs10139154
rs10139154
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE The current study provides preliminary </span>evidence of the involvement of SCFD1 rs10139154 in the risk of developing AD. 31267315

2019

dbSNP: rs10164112
rs10164112
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE However, in combination with the <i>APOE</i> ε4 allele, the rs10164112-T allele has been found to be a risk factor for AD in the Han Chinese population reported in this study. 30666118

2019

dbSNP: rs10173717
rs10173717
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE In this cohort, we identified novel loci genome-wide significantly associated as modifiers of the age of onset of AD (CD44, rs187116, P=1.29 × 10⁻¹²; NPHP1, rs10173717, P=1.74 × 10⁻¹²; CADPS2, rs3757536, P=1.54 × 10⁻¹⁰; GREM2, rs12129547, P=1.69 × 10⁻¹³, among others) as well as other loci known to be associated with AD. 22710270

2013

dbSNP: rs1022442
rs1022442
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE Two genes found to be near the top SNPs, CYP19A1 (rs2899472, p = 1.90 × 10(-7)) and NCAM2 (rs1022442, p = 2.75 × 10(-7)) have been reported as genetic factors related to the progression of AD from previous studies. 20932310

2010

dbSNP: rs1024611
rs1024611
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE We analyzed the associations between the baseline plasma MCP-1 level, longitudinal cognitive changes, and genetic effects of CCL2 rs1024611 and its receptor, CC-chemokine receptor 2 (CCR2) rs1799864, in AD. 29352259

2018

dbSNP: rs1035071612
rs1035071612
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.060 GeneticVariation BEFREE In addition, the C766T polymorphism was shown not to influence the age onset of AD. 15925094

2005

dbSNP: rs1035071612
rs1035071612
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.060 GeneticVariation BEFREE The C-allele of the silent C766T polymorphism in exon 3 of the LRP gene might be associated with AD, however, results are conflicting and thus discussed controversially. 12898587

2003

dbSNP: rs1035071612
rs1035071612
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.060 GeneticVariation BEFREE Our data suggested that the polymorphism of LRP C766T was strongly associated with AD and T allele might be a protective factor for AD in Chinese Han population. 18706476

2008

dbSNP: rs1035071612
rs1035071612
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.060 GeneticVariation BEFREE Recently, several studies have reported a correlation between a polymorphism (C766T) in exon 3 of LRP and AD. 10027548

1999

dbSNP: rs1035071612
rs1035071612
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.060 GeneticVariation BEFREE The LRP C766T polymorphism is protective against Alzheimer's disease, perhaps through alteration of LRP expression. 9832203

1998

dbSNP: rs1035071612
rs1035071612
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.060 GeneticVariation BEFREE In the present study, we have investigated the extent of amyloid beta protein (Abeta) deposition as cerebral amyloid angiopathy (CAA) or senile plaques (SP) in relationship to OLR1 +1071 and +1073 polymorphisms and LRP1 C766T polymorphism in patients with AD There was an increased Abeta40 load as CAA, but not as SP, in frontal cortex of AD patients carrying OLR1+1073 CC genotype, compared to those with CT, TT or CT+TT genotypes, but only in those individuals without apolipoprotein (APOE) epsilon4 allele. 16328515

2006

dbSNP: rs1036819
rs1036819
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE In addition to a ptau/Aβ42 rQTL and association with AD case/control status, rs1036819 is a strong rQTL for case/control status/Aβ42 and for tau/Aβ42. 30153862

2018

dbSNP: rs1038162399
rs1038162399
APP
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE Generation and deposition of Aβ43 by the virtually inactive presenilin-1 L435F mutant contradicts the presenilin loss-of-function hypothesis of Alzheimer's disease. 26988102

2016

dbSNP: rs10399931
rs10399931
CUI: C0002395
Disease: Alzheimer's Disease
Alzheimer's Disease
0.010 GeneticVariation BEFREE Polymorphisms of the CHI3L1 gene (rs4950928 C>G and rs10399931 C>T) are associated with the risk and prognosis of AD and can affect the expression of CHI3L1 in plasma. 30223258

2019