Source: BEFREE

Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs104893624
rs104893624
CUI: C0472817
Disease: WHIM syndrome
WHIM syndrome
0.750 GeneticVariation BEFREE To characterize novel genetic causes of the syndrome, we recruited a pediatric patient with possible WHIM syndrome, performed CXCR4 gene sequencing and compared his clinical phenotype and CXCR4 tail amino acid sequences with other patients with WHIM syndrome carrying CXCR4 (R334X) mutations. 27059040

2016

dbSNP: rs104893624
rs104893624
CUI: C0472817
Disease: WHIM syndrome
WHIM syndrome
0.750 GeneticVariation BEFREE Deletion of the 238-246 motif accelerated CXCL12-induced wild-type (WT) receptor endocytosis but enabled CXCL12-mediated endocytosis and normalized signaling by the WHIM-associated receptor CXCR4(R334X). 25355818

2015

dbSNP: rs104893624
rs104893624
CUI: C0472817
Disease: WHIM syndrome
WHIM syndrome
0.750 GeneticVariation BEFREE Accordingly, like CXCR4(R334X), the most common truncation mutation in WHIM syndrome, CXCR4(E343K) mediated approximately 2-fold increased signaling in calcium flux and chemotaxis assays relative to wild-type CXCR4; however, CXCR4(E343K) had a reduced effect on blocking normal receptor down-regulation from the cell surface. 22596258

2012

dbSNP: rs104893624
rs104893624
CUI: C0472817
Disease: WHIM syndrome
WHIM syndrome
0.750 GeneticVariation BEFREE Together, our data provide further evidence that CXCR4(R334X) is a gain-of-function mutation, and support clinical evaluation of AMD3100 as mechanism-based treatment in patients with WHIM syndrome. 21070597

2011

dbSNP: rs104893624
rs104893624
CUI: C0472817
Disease: WHIM syndrome
WHIM syndrome
0.750 GeneticVariation BEFREE A nonsense mutation (C-->T) truncating the CXC chemokine receptor 4 (CXCR4) C-terminal cytoplasmic tail domain occurred at nucleotide position 1000(R334X) of the CXCR4 gene in one allele of the patient was identified, and the person was diagnosed as having WHIM syndrome. 19476565

2009

dbSNP: rs104893626
rs104893626
CUI: C0472817
Disease: WHIM syndrome
WHIM syndrome
0.720 GeneticVariation BEFREE We engineered WM cells to express the most common WHIM (Warts, Hypogammaglobulinemia, Infections and Myelokathexis), CXCR(S338X) mutation in WM. 24912431

2015

dbSNP: rs104893626
rs104893626
CUI: C0472817
Disease: WHIM syndrome
WHIM syndrome
0.720 GeneticVariation BEFREE We screened 418 patients with B-cell lymphoproliferative disorders and described the presence of the C1013G/CXCR4 warts, hypogammaglobulinemia, infections, and myelokathexis-associated mutation in 28.2% (37/131) of patients with lymphoplasmacytic lymphoma (Waldenström macroglobulinemia [WM]), being either absent or present in only 7% of other B-cell lymphomas. 24711662

2014

dbSNP: rs767830104
rs767830104
CUI: C1956346
Disease: Coronary Artery Disease
Coronary Artery Disease
0.050 GeneticVariation BEFREE Association of V249I and T280M polymorphisms in the chemokine receptor CX3CR1 gene with early onset of coronary artery disease among North Indians. 22731642

2012

dbSNP: rs767830104
rs767830104
CUI: C1956346
Disease: Coronary Artery Disease
Coronary Artery Disease
0.050 GeneticVariation BEFREE Adjusted for classical risk factors (age, sex, hypertension, dyslipidemia, diabetes mellitus and smoking), the odds ratio (OR) of V249I for CAD was 0.95 (95% confidence interval (CI)=0.78-1.15, p=0.61). 19628406

2009

dbSNP: rs767830104
rs767830104
CUI: C1956346
Disease: Coronary Artery Disease
Coronary Artery Disease
0.050 GeneticVariation BEFREE We examined the frequencies of V249I and T280M among early-onset CAD patients (G1; n = 149; <50 years), late-onset CAD patients (G2; n = 150; >65 years) and healthy controls (HC; n = 149, 47-93 years) without known CAD risk factors. 18609106

2008

dbSNP: rs767830104
rs767830104
CUI: C1956346
Disease: Coronary Artery Disease
Coronary Artery Disease
0.050 GeneticVariation BEFREE We investigated the effect of 5 common variations of chemokine and chemokine receptor genes (SDF1-3'A, CCR5-delta32, CCR2-64I, CX3CR1-V249I and CX3CR1-T280M) on predisposition to CAD. 16480760

2007

dbSNP: rs767830104
rs767830104
CUI: C1956346
Disease: Coronary Artery Disease
Coronary Artery Disease
0.050 GeneticVariation BEFREE Genotyping of the CX3CR1-V249I polymorphism was performed in a cohort of 339 white individuals who underwent cardiac catheterization (n=197 with and n=142 without CAD, respectively). 11532900

2001

dbSNP: rs104893626
rs104893626
CUI: C0024419
Disease: Waldenstrom Macroglobulinemia
Waldenstrom Macroglobulinemia
0.030 GeneticVariation BEFREE The AS-PCR assays detected CXCR4(S338X) mutations in WM and IgM monoclonal gammopathy of unknown significance (MGUS) patients not revealed by Sanger sequencing. 26659815

2016

dbSNP: rs104893626
rs104893626
CUI: C0024419
Disease: Waldenstrom Macroglobulinemia
Waldenstrom Macroglobulinemia
0.030 GeneticVariation BEFREE Last, CXCR4(S338X) WM cells showed varying levels of resistance to other WM relevant therapeutics, including bendamustine, fludarabine, bortezomib and idelalisib in the presence of SDF-1a. 24912431

2015

dbSNP: rs104893626
rs104893626
CUI: C0024419
Disease: Waldenstrom Macroglobulinemia
Waldenstrom Macroglobulinemia
0.030 GeneticVariation BEFREE C1013G/CXCR4 acts as a driver mutation of tumor progression and modulator of drug resistance in lymphoplasmacytic lymphoma. 24711662

2014

dbSNP: rs371074389
rs371074389
CUI: C0027651
Disease: Neoplasms
Neoplasms
0.030 GeneticVariation BEFREE Previous studies have demonstrated that the CXCL12 G801A polymorphism is closely correlated with tumor susceptibility. 26782381

2015

dbSNP: rs371074389
rs371074389
CUI: C0027651
Disease: Neoplasms
Neoplasms
0.030 GeneticVariation BEFREE CXCL12 G801A polymorphism is associated with an increased risk of benign salivary gland tumors in the Chinese population. 21298365

2012

dbSNP: rs371074389
rs371074389
CUI: C0027651
Disease: Neoplasms
Neoplasms
0.030 GeneticVariation BEFREE 801A carrier status (801G/A, 801A/A) was found to be associated with a higher PBB count compared with 801G/G homozygous patients (P=0.031) and higher frequency of extramedullar tumor sites (odds ratio 2.92, 95% confidence interval 1.18-7.21, P=0.018). 16818471

2006

dbSNP: rs763059810
rs763059810
CUI: C2363741
Disease: HIV-1 infection
HIV-1 infection
0.030 GeneticVariation BEFREE Structural insight into a novel human CCR5-V130I variant associated with resistance to HIV-1 infection. 23869485

2014

dbSNP: rs763059810
rs763059810
CUI: C2363741
Disease: HIV-1 infection
HIV-1 infection
0.030 GeneticVariation BEFREE In addition, we also identified the best three-factor interaction model, including the CCR5 58755-A/G, 59029-A/G, and CCR2-V64I polymorphisms, indicating that there were also strong gene-gene interactions between the CCR5 promoter and CCR2 polymorphisms on the susceptibility of HIV-1 infection. 23057571

2012

dbSNP: rs763059810
rs763059810
Human immunodeficiency virus (HIV) II infection category B1
0.030 GeneticVariation BEFREE In a North American, treated, adherent human immunodeficiency virus (HIV)-positive cohort (self-identified whites, n = 175; blacks, n = 218), we investigated whether CYP2B6 (516G>T, 983T>C), UGT2B7 (IVS1+985A>G, 802C>T), MDR1 3435C>T, chemokine (C-C motif) receptor 2 (CCR2) 190G>A, and CCR5 (-2459G>A, Δ32) polymorphisms influenced the time to achieve virologic success (TVLS). 21673041

2011

dbSNP: rs763059810
rs763059810
CUI: C2363741
Disease: HIV-1 infection
HIV-1 infection
0.030 GeneticVariation BEFREE A single nucleotide polymorphism (SNP) at codon 64 in the CC chemokine receptor 2 gene (CCR2 V64I) has been associated with a dominant effect of delaying disease progression from human immunodeficiency virus-1 (HIV-1) infection to acquired immunodeficiency syndrome (AIDS). 12325020

2002

dbSNP: rs763059810
rs763059810
Human immunodeficiency virus (HIV) II infection category B1
0.030 GeneticVariation BEFREE A single nucleotide polymorphism (SNP) at codon 64 in the CC chemokine receptor 2 gene (CCR2 V64I) has been associated with a dominant effect of delaying disease progression from human immunodeficiency virus-1 (HIV-1) infection to acquired immunodeficiency syndrome (AIDS). 12325020

2002

dbSNP: rs763059810
rs763059810
Human immunodeficiency virus (HIV) II infection category B1
0.030 GeneticVariation BEFREE Of the 99 HIV-seronegative female workers, 19 (19.2%) were heterozygous for the CCR2b-V64I mutation compared with 37 (23%) of the 161 HIV-seropositive FSW (P = 0.47). 11468722

2001

dbSNP: rs766914563
rs766914563
CUI: C0027651
Disease: Neoplasms
Neoplasms
0.030 GeneticVariation BEFREE Previous studies have demonstrated that the CXCL12 G801A polymorphism is closely correlated with tumor susceptibility. 26782381

2015