Source: ALL
Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 847
Gene Symbol: CAT
CAT
0.050 Biomarker phenotype BEFREE Five male patients from four different families presented with a clinical record of chronic granulomatous disease (CGD): recurrent infections of the skin and/or respiratory tract with catalase-positive microorganisms, sometimes in combination with granulomata and/or abscesses in various organs. 1431553 1992
Entrez Id: 6341
Gene Symbol: SCO1
SCO1
0.010 Biomarker phenotype BEFREE Increased frequency of HLA-DR3 and complotype SCO1 in Mexican mestizo children with amoebic abscess of the liver. 9226686 1996
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.020 AlteredExpression phenotype BEFREE IL-8 mRNA levels were significantly higher in patients with a histologic score >2 (p = 0.01) and in patients with crypt abscesses (p = 0.01). 10961587 2000
Entrez Id: 847
Gene Symbol: CAT
CAT
0.050 Biomarker phenotype BEFREE The PerR-regulated katA gene encodes the sole catalase of S. aureus, which is an important starvation survival determinant but is surprisingly not required for pathogenicity in a murine skin abscess model of infection. 11349039 2001
Entrez Id: 7884
Gene Symbol: SLBP
SLBP
0.010 Biomarker phenotype BEFREE Furthermore, an E. coli wild-type strain that did not induce abscess formation in the synergy model was transformed with a plasmid encoding the hbp gene, and mixed infections with this strain lead to increased growth of B. fragilis and induction of abscess lesions. 11748157 2002
Entrez Id: 3069
Gene Symbol: HDLBP
HDLBP
0.010 Biomarker phenotype BEFREE Furthermore, an E. coli wild-type strain that did not induce abscess formation in the synergy model was transformed with a plasmid encoding the hbp gene, and mixed infections with this strain lead to increased growth of B. fragilis and induction of abscess lesions. 11748157 2002
Entrez Id: 566
Gene Symbol: AZU1
AZU1
0.010 Biomarker phenotype BEFREE Furthermore, an E. coli wild-type strain that did not induce abscess formation in the synergy model was transformed with a plasmid encoding the hbp gene, and mixed infections with this strain lead to increased growth of B. fragilis and induction of abscess lesions. 11748157 2002
Entrez Id: 50865
Gene Symbol: HEBP1
HEBP1
0.010 Biomarker phenotype BEFREE Furthermore, an E. coli wild-type strain that did not induce abscess formation in the synergy model was transformed with a plasmid encoding the hbp gene, and mixed infections with this strain lead to increased growth of B. fragilis and induction of abscess lesions. 11748157 2002
Entrez Id: 10254
Gene Symbol: STAM2
STAM2
0.010 Biomarker phenotype BEFREE Furthermore, an E. coli wild-type strain that did not induce abscess formation in the synergy model was transformed with a plasmid encoding the hbp gene, and mixed infections with this strain lead to increased growth of B. fragilis and induction of abscess lesions. 11748157 2002
Entrez Id: 4827
Gene Symbol: NM
NM
0.010 Biomarker phenotype BEFREE During intestinal inflammation in inflammatory bowel disease (IBD) there is increased paracellular permeability and strong migration of the neutrophils into the mucosa as well as transepithelial neutrophil migration with the formation of crypt abscesses. 12571418 2003
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.060 AlteredExpression phenotype BEFREE Multivariate analysis showed that presence of immature polymorphonuclear leukocytes in peripheral blood (odds ratio [OR], 3.67; 95% confidence interval [CI], 1.08-12.63), high C-reactive protein levels (>12 mg/dL) (OR, 5.24; 95% CI, 1.10-24.93), and no underlying disease at presentation (OR, 5.48; 95% CI, 1.06-28.25) were independent predictors of the occurrence of necrosis or/and abscess. 14999627 2004
Entrez Id: 3383
Gene Symbol: ICAM1
ICAM1
0.010 AlteredExpression phenotype BEFREE Endothelial ICAM-1 was up-regulated in areas with dense lymphocyte infiltration and near crypt abscesses and ulcerations. 16497620 2006
Entrez Id: 10763
Gene Symbol: NES
NES
0.010 AlteredExpression phenotype LHGDN In a series of 40 surgical specimens, including gliomas, vascular malformations, abscesses and angiomas, the glial reaction has been studied by immunohistochemistry and immunofluorescence of Nestin, GFAP and Vimentin. 16826367 2006
Entrez Id: 4582
Gene Symbol: MUC1
MUC1
0.010 AlteredExpression phenotype BEFREE MUC1 expression was upregulated in severe UC at the site of rupture of crypt abscesses. 16924127 2006
Entrez Id: 7031
Gene Symbol: TFF1
TFF1
0.010 AlteredExpression phenotype BEFREE There is upregulation in mucin MUC1 at crypt abscesses and neo-expression of TFF1 trefoil peptide in severe disease. 16924127 2006
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.030 Biomarker phenotype BEFREE In a mouse abscess model, the type II clones significantly induced serum IL-1beta and IL-6, as well as other infectious symptoms. 17081195 2007
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.030 GeneticVariation phenotype BEFREE A significant association was observed between the occurrence of the GG genotype or the G allele expression of the polymorphic locus-174 (G/C) of the IL6 gene, and the presence of the symptomatic dental abscesses in women and in individuals < or =35 years old. 17511783 2007
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.020 GeneticVariation phenotype BEFREE Association of CD14, IL1B, IL6, IL10 and TNFA functional gene polymorphisms with symptomatic dental abscesses. 17511783 2007
Entrez Id: 64127
Gene Symbol: NOD2
NOD2
0.020 Biomarker phenotype LHGDN Analysis of the NOD2/CARD15 gene in patients affected with the aseptic abscesses syndrome with or without inflammatory bowel disease. 17570063 2008
Entrez Id: 64127
Gene Symbol: NOD2
NOD2
0.020 GeneticVariation phenotype BEFREE Analysis of the NOD2/CARD15 gene in patients affected with the aseptic abscesses syndrome with or without inflammatory bowel disease. 17570063 2008
Entrez Id: 3329
Gene Symbol: HSPD1
HSPD1
0.010 Biomarker phenotype BEFREE All isolates were rapidly growing nonpigmented mycobacteria and presented a pattern by PCR-restriction enzyme analysis of the hsp65 gene with BstEII of bands of 235 and 210 bp and with HaeIII of bands of 200, 70, 60, and 50 bp, which is common to Mycobacterium abscessus type 2, Mycobacterium bolletii, and Mycobacterium massiliense. hsp65 and rpoB gene sequencing of a subset of 20 isolates was used to discriminate between these three species. hsp65 and rpoB sequences chosen at random from 11 of the 58 isolates from surgical patients and the postinjection abscess isolate presented the highest degrees of similarity with the corresponding sequences of M. massiliense. 18174307 2008
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.020 AlteredExpression phenotype BEFREE Furthermore, IL-8 and TNF-alpha expression and nuclear phosphorylated NF-kappaB p65 expression could be immunohistochemically confirmed in inflamed epithelium with cryptitis or crypt abscess in UC patients. 19369513 2009
Entrez Id: 6857
Gene Symbol: SYT1
SYT1
0.010 AlteredExpression phenotype BEFREE Furthermore, IL-8 and TNF-alpha expression and nuclear phosphorylated NF-kappaB p65 expression could be immunohistochemically confirmed in inflamed epithelium with cryptitis or crypt abscess in UC patients. 19369513 2009
Entrez Id: 64689
Gene Symbol: GORASP1
GORASP1
0.010 AlteredExpression phenotype BEFREE Furthermore, IL-8 and TNF-alpha expression and nuclear phosphorylated NF-kappaB p65 expression could be immunohistochemically confirmed in inflamed epithelium with cryptitis or crypt abscess in UC patients. 19369513 2009
Entrez Id: 5970
Gene Symbol: RELA
RELA
0.010 AlteredExpression phenotype BEFREE Furthermore, IL-8 and TNF-alpha expression and nuclear phosphorylated NF-kappaB p65 expression could be immunohistochemically confirmed in inflamed epithelium with cryptitis or crypt abscess in UC patients. 19369513 2009