Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1080
Gene Symbol: CFTR
CFTR
0.210 AlteredExpression disease BEFREE H. pylori infection downregulates duodenal epithelial cellular CFTR and SLC26A6 expressions through TGFβ-mediated P38 MAPK signaling pathway, which contributes to further elucidating the pathogenesis of H. pylori-associated duodenal ulcer. 30119655 2018
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.210 GeneticVariation disease BEFREE The G1612A(rs10434) and C936T(rs3025039) polymorphisms in the 3' untranslated region (3'-UTR) of VEGF gene were genotyped in a total of 844 subjects including 385 GC, 143 ulcer including 98 gastric ulcer (GU), 45 duodenal ulcer (DU), and 316 nonulcer subjects. 19496079 2009
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.210 Biomarker disease RGD Using a rat model, we have demonstrated that Candida infection can delay the wound healing process of duodenal ulcers by means of a low expression of VEGF-A and PCNA. 18622701 2008
Entrez Id: 1080
Gene Symbol: CFTR
CFTR
0.210 Biomarker disease RGD A novel small molecule CFTR inhibitor attenuates HCO3- secretion and duodenal ulcer formation in rats. 15905414 2005
Entrez Id: 6774
Gene Symbol: STAT3
STAT3
0.200 Biomarker disease RGD Thus, STAT3 represents an important new molecular mechanism in experimental duodenal ulceration. 24385009 2014
Entrez Id: 7037
Gene Symbol: TFRC
TFRC
0.200 Biomarker disease RGD Role of iron in the pathogenesis of cysteamine-induced duodenal ulceration in rats. 19342511 2009
Entrez Id: 4891
Gene Symbol: SLC11A2
SLC11A2
0.200 Biomarker disease RGD Role of iron in the pathogenesis of cysteamine-induced duodenal ulceration in rats. 19342511 2009
Entrez Id: 48
Gene Symbol: ACO1
ACO1
0.200 Biomarker disease RGD Role of iron in the pathogenesis of cysteamine-induced duodenal ulceration in rats. 19342511 2009
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE The presence of the cagA gene was significantly associated with duodenal ulcer (p<0.05). 25228509 2014
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE Histology revealed the presence of infection in 68% of cases of mild/chronic nonspecific gastritis with others belonging to the GU sequel. cagA gene carriage was observed in 104 (51%) cases or mostly from DU, GU and GC groups, of which 97 were Western type strains while 3 were East-Asian type strains that are rarely observed in South Asia. vacA allelic variant s1am1 was most commonly observed, followed by s1am2, and s1bm1, with direct correlation in diseased cases (gastritis, GU, DU and GC). 23493000 2013
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE Moreover, our findings indicated that serum concentrations of IL-18 were influenced by CagA factor, irrespective of the VacA status, suggesting that high levels of IL-18 in CagA-positive subjects predisposes to susceptibility to DU. 23746337 2013
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 Biomarker disease BEFREE In conclusion, our meta-analysis suggests that there is no evidence of significant association between IL-1RN VNTR and DU with or without Helicobacter pylori infection in overall population, whereas significant association is found by subgroup analyses which showed protective effect of IL-1RN allele 2 against DU risk in Caucasian population. 23800434 2013
Entrez Id: 54742
Gene Symbol: LY6K
LY6K
0.100 GeneticVariation disease GWASDB A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population. 22387998 2012
Entrez Id: 8629
Gene Symbol: JRK
JRK
0.100 GeneticVariation disease GWASDB A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population. 22387998 2012
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE The TPMs and 3' region structures of the H. pylori CagA gene in the duodenal ulcer and gastric adenocarcinoma patients have no significant differences. 23464450 2012
Entrez Id: 8629
Gene Symbol: JRK
JRK
0.100 GeneticVariation disease GWASCAT A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population. 22387998 2012
Entrez Id: 8581
Gene Symbol: LY6D
LY6D
0.100 GeneticVariation disease GWASDB A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population. 22387998 2012
Entrez Id: 100288181
Gene Symbol: LNCOC1
LNCOC1
0.100 GeneticVariation disease GWASDB A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population. 22387998 2012
Entrez Id: 346007
Gene Symbol: EYS
EYS
0.100 GeneticVariation disease GWASDB A genome-wide association study identifies two susceptibility loci for duodenal ulcer in the Japanese population. 22387998 2012
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE Furthermore, the expression of cagA mRNA was confirmed by RT-PCR for the representative strains from both DU and NUD/AV subjects indicating the active cagA promoter regions of these strains. 21195664 2011
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 Biomarker disease BEFREE These findings show that no evidence for the involvement of a proinflammatory polymorphism in the IL-1Beta-511, IL-1RN and TNF-A-308 in the susceptibility to DU in China. 19804405 2010
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 GeneticVariation disease BEFREE This does not support the view that subtypes of the 3' region of cagA gene in H. pylori isolated from Iran correlate with the clinical outcomes of H. pylori, but colonization with cagA positive strains was significantly higher among duodenal ulcer than gastritis patients in Iran. 18612816 2009
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE IL-1B-511, IL-1RN, and IL-2 genetic polymorphisms were not important contributors to the pathogenesis of GU, GC, and DU in Korean patients. 18761558 2008
Entrez Id: 6279
Gene Symbol: S100A8
S100A8
0.100 Biomarker disease BEFREE We studied 144 patients with non-cardia gastric cancer (NCGC)(41/50 with present or past H. pylori infection), 75 with duodenal ulcer (DU)(66 H. pylori infected) and 171 with gastritis (CG)(107 H. pylori infected). cagA gene was present in 24/28 NCGC, 45/59 DU and 56/107 CG. 18179773 2008
Entrez Id: 3557
Gene Symbol: IL1RN
IL1RN
0.100 GeneticVariation disease BEFREE Three hundred and ninety-nine patients with gastroduodenal diseases (129 chronic gastritis, 127 duodenal ulcer and 143 non-cardiac gastric cancer) and 264 healthy controls were genotyped for IL-1B-511 and IL-1RN gene polymorphisms by the PCR-RFLP method. 17295877 2007