Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4900
Gene Symbol: NRGN
NRGN
0.010 Biomarker group BEFREE The aim of this study was to examine the synaptic biomarker neurogranin in cerebrospinal fluid (CSF) in different stages of HIV infection and in relation to what is known about CSF neurogranin in other neurodegenerative diseases. 30649659 2019
Entrez Id: 965
Gene Symbol: CD58
CD58
0.010 Biomarker group BEFREE Together, these results indicate that reduction in the CD2/CD58 interaction pathway in mucosal lymphocytes might play a crucial role in mucosal T-cell dysfunction during acute SIV/HIV infection. 30480508 2019
Entrez Id: 9927
Gene Symbol: MFN2
MFN2
0.010 AlteredExpression group BEFREE Here, we show that upon HIV infection, macrophages increase the expression of BCL2, BCLXL, TREM1, mitofusin 1 (MFN1), and MFN2 and the translocation of BCL2L11 (BIM) to the mitochondria and decrease the expression of BCL2-associated agonist of cell death (BAD) and BAX while maintaining a 95% survival rate over 28 days. 31719184 2019
Entrez Id: 6559
Gene Symbol: SLC12A3
SLC12A3
0.010 Biomarker group BEFREE Both pathologies modify host immune status and it is possible that HIV infection may modulate the frequency and pathogeny of cysticercosis of the central nervous system (i.e., neurocysticercosis [NCC]). 31189001 2019
Entrez Id: 406931
Gene Symbol: MIR139
MIR139
0.010 Biomarker group BEFREE MiR-125a-5p and miR-139-5p, transcripts known to be differentially expressed in HIV-positive individuals, may serve as unique biomarkers predictive of cardiovascular disease in these patients and may help clarify processes because of HIV infection that contribute to cardiovascular disorders in this population. 31764100 2019
Entrez Id: 13
Gene Symbol: AADAC
AADAC
0.010 Biomarker group BEFREE A Population Pharmacokinetic Analysis Shows that Arylacetamide Deacetylase (AADAC) Gene Polymorphism and HIV Infection Affect the Exposure of Rifapentine. 30670438 2019
Entrez Id: 1436
Gene Symbol: CSF1R
CSF1R
0.010 AlteredExpression group BEFREE Overexpression and activation of colony-stimulating factor 1 receptor in the SIV/macaque model of HIV infection and neuroHIV. 31033097 2019
Entrez Id: 2323
Gene Symbol: FLT3LG
FLT3LG
0.010 Biomarker group BEFREE Flt3L-Mediated Expansion of Plasmacytoid Dendritic Cells Suppresses HIV Infection in Humanized Mice. 31775044 2019
Entrez Id: 3030
Gene Symbol: HADHA
HADHA
0.010 Biomarker group BEFREE Moreover, the expression levels of the genes including ACLY, ALDH18A1, HADHA, and YARS in the PBMCs tissue and HBEGF, PKN3, DEGS2, and EDN3 in the fat tissue were found to be different in the HIV-infected patients, which can be considered as new biomarkers for HIV infection. 31317550 2019
Entrez Id: 11009
Gene Symbol: IL24
IL24
0.010 AlteredExpression group BEFREE Therefore, the objective of this study was to evaluate the gene and protein expressions of IL-24 at the initial moments of HIV infection in PBMCs. 30761646 2019
Entrez Id: 26253
Gene Symbol: CLEC4E
CLEC4E
0.010 GeneticVariation group BEFREE Impact of Aging and HIV Infection on the Function of the C-Type Lectin Receptor MINCLE in Monocytes. 30239628 2019
Entrez Id: 50615
Gene Symbol: IL21R
IL21R
0.010 Biomarker group BEFREE The more insights in this area might be required to further understand the role of IL-21R expressing class SMB cells in HIV infection. 31044603 2019
Entrez Id: 6363
Gene Symbol: CCL19
CCL19
0.010 Biomarker group BEFREE Latency models based on treating resting CD4 T cells with chemokine (C-C motif) ligand 19 (CCL19) or interleukin-7 (IL7) before HIV infection and next-generation sequencing were used to identify the miRNAs involved in HIV latency. 31288207 2019
Entrez Id: 4904
Gene Symbol: YBX1
YBX1
0.010 Biomarker group BEFREE Overexpression of domain negative YB-1 mutants illustrated that a residue Lysine at 118 plays a key role in supporting HIV infection in CD4 T cells. 31274540 2019
Entrez Id: 472
Gene Symbol: ATM
ATM
0.010 Biomarker group BEFREE These results demonstrate that failure of DSB repair due to ATM deficiency leads to increased DNA damage and renders CD4 T cells prone to senescence and apoptotic death, contributing to CD4 T cell depletion or dysfunction in cART-controlled, latent HIV infection. 31781094 2019
Entrez Id: 4922
Gene Symbol: NTS
NTS
0.010 GeneticVariation group BEFREE <b>Abbreviations:</b> ART: anti-retroviral therapy; Child PIP: Child Healthcare Problem Identification Programme; CCF: congestive cardiac failure; CNS: central nervous system; CoNS: coagulase-negative <i>staphylococci</i>; CSF: cerebrospinal fluid; DNA pcr: deoxyribonucleic acid polymerase chain reaction; ETAT: emergency triage assessment and treatment; LMIC: low- and middle-income countries; MDG: Millennium Development Goals; MRI: magnetic resonance imaging; MRSA: methicillin-resistant <i>Staphylococcus aureus</i>; NAI: non-accidental injury; NTS: non-typhi salmonella; PJP: <i>Pneumocystis jiroveci</i> pneumonia; PSHD: presumed severe HIV disease; QECH: Queen Elizabeth Central Hospital; RHD: rheumatic heart disease; RTA: road traffic accident; TB: tuberculosis; TBM: tuberculous meningitis; WHO: World Health Organization; SAM: severe acute malnutrition. 30451103 2019
Entrez Id: 28638
Gene Symbol: TRBC2
TRBC2
0.010 Biomarker group BEFREE These data suggest that TRBC1T-cell responses are of better quality than their TRBC2 counterparts, which should be considered in immunotherapeutic strategies for HIV infection. 30932962 2019
Entrez Id: 3394
Gene Symbol: IRF8
IRF8
0.010 Biomarker group BEFREE Lower Interferon Regulatory Factor-8 Expression in Peripheral Myeloid Cells Tracks With Adverse Central Nervous System Outcomes in Treated HIV Infection. 31849969 2019
Entrez Id: 54820
Gene Symbol: NDE1
NDE1
0.010 Biomarker group BEFREE NDE proteins differ in HIV infection alone and cognitive impairment between men and women suggesting mechanistic sex differences associated with HAND. 31149942 2019
Entrez Id: 55256
Gene Symbol: ADI1
ADI1
0.010 GeneticVariation group BEFREE PrEP was associated with decreased risk of HIV infection vs placebo or no PrEP after 4 months to 4 years (11 trials; relative risk [RR], 0.46 [95% CI, 0.33-0.66]; I2 = 67%; absolute risk reduction [ARD], -2.0% [95% CI, -2.8% to -1.2%]). 31184746 2019
Entrez Id: 8074
Gene Symbol: FGF23
FGF23
0.010 Biomarker group BEFREE Among men with or at-risk of HIV infection, higher FGF-23 was associated with greater risk of frailty, particularly in blacks. 30299347 2019
Entrez Id: 7248
Gene Symbol: TSC1
TSC1
0.010 Biomarker group BEFREE The lateral flow urine lipoarabinomannan (LF-LAM) assay Alere Determine™ TB LAM Ag is recommended by the World Health Organization (WHO) to help detect active tuberculosis in HIV-positive people with severe HIV disease. 31633805 2019
Entrez Id: 10005
Gene Symbol: ACOT8
ACOT8
0.010 Biomarker group BEFREE In this review, we focused on the interplay between Nef and ACOT8 proteins, highlighting the possible physiological relevance in HIV infection. 31179598 2019
Entrez Id: 572
Gene Symbol: BAD
BAD
0.010 AlteredExpression group BEFREE Here, we show that upon HIV infection, macrophages increase the expression of BCL2, BCLXL, TREM1, mitofusin 1 (MFN1), and MFN2 and the translocation of BCL2L11 (BIM) to the mitochondria and decrease the expression of BCL2-associated agonist of cell death (BAD) and BAX while maintaining a 95% survival rate over 28 days. 31719184 2019
Entrez Id: 11006
Gene Symbol: LILRB4
LILRB4
0.010 Biomarker group BEFREE Conversely, specific monocyte populations co-expressing high levels of HLA-I, 3 immunomodulatory receptors, CD64, LILRA2, and LILRB4, and the restriction factor CD317 (also known as BST2/Tetherin), were more abundant in early HIV-infection. 31824485 2019