Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 55902
Gene Symbol: ACSS2
ACSS2
0.010 Biomarker disease BEFREE Our study links the HIV/SIV infection-induced fatty acid enzyme ACSS2 to HIV latency and identifies histone lysine crotonylation as a novel epigenetic regulator for HIV transcription that can be targeted for HIV eradication. 29457784 2018
Entrez Id: 9048
Gene Symbol: ARTN
ARTN
0.010 Biomarker disease BEFREE Importantly, the addition of PH-797804 to ART initiated during chronic SIV infection reduced immune activation and restored immune system parameters to the levels observed when ART was initiated on week 1 after infection. 30161247 2018
Entrez Id: 181
Gene Symbol: AGRP
AGRP
0.010 Biomarker disease BEFREE Importantly, the addition of PH-797804 to ART initiated during chronic SIV infection reduced immune activation and restored immune system parameters to the levels observed when ART was initiated on week 1 after infection. 30161247 2018
Entrez Id: 834
Gene Symbol: CASP1
CASP1
0.010 Biomarker disease BEFREE We found a significant increase in caspase-1 and IL-18 in SIV infection that positively correlated with inflammatory monocytes and negatively correlated with CD4<sup>+</sup> T cell counts. 29611111 2018
Entrez Id: 4360
Gene Symbol: MRC1
MRC1
0.010 Biomarker disease BEFREE Furthermore, AFB1 promoted the polarization of SIV-infected PAMs to the M1 phenotype at 8 hpi and to the M2 phenotype at 24 hpi, as measured by the increases in IL-10 expression and in the number of CD206-positive PAMs as well as by the morphological changes observed by scanning electron microscopy. 30196302 2018
Entrez Id: 50615
Gene Symbol: IL21R
IL21R
0.010 AlteredExpression disease BEFREE Here we show that chronic simian immunodeficiency virus (SIV) infection is characterized by an expansion of either lymph node germinal center (GC) B cells that co-express Bcl6, Ki-67 and IL-21R and correlate with expanded T follicular helper (Tfh) cells or B cells that lack Bcl6, Ki-67 and IL-21R but express high levels of anti-apoptotic Bcl2 that negatively correlate with Tfh cells. 30191661 2018
Entrez Id: 6348
Gene Symbol: CCL3
CCL3
0.010 Biomarker disease BEFREE We observed an increase in hepatic macrophages during untreated SIV infection that was associated with a number of inflammatory and fibrosis mediators (TNFα, CCL3, TGFβ). 29466439 2018
Entrez Id: 3002
Gene Symbol: GZMB
GZMB
0.010 AlteredExpression disease BEFREE We observed that fCD8 cells, T follicular helper (Tfh) cells, and T follicular regulatory cells (Tfreg) were all elevated in chronic SIV infection. fCD8 cells of LVL animals tended to express more Gag-specific granzyme B and exhibited significantly greater killing than did HVL animals, and their cell frequencies were negatively correlated with viremia, suggesting a role in viremia control. 29507105 2018
Entrez Id: 9023
Gene Symbol: CH25H
CH25H
0.010 AlteredExpression disease BEFREE CH25H expression was interferon-dependent and induced by SIV infection in monkey-derived macrophages and PBMC cells, and 25-HC inhibited SIV infection both in permissive cell lines and primary monkey lymphocytes. 30524435 2018
Entrez Id: 941
Gene Symbol: CD80
CD80
0.010 Biomarker disease BEFREE In addition, the increased occurrence of SIV infection accompanied by increases in the level of IL-10 in sera and lungs, in the spleen index and in the number of CD206-positive mouse alveolar macrophages but decreases in the level of TNF-α in sera and lungs, in the thymus index and in the number of CD80-positive mouse alveolar macrophages was observed in SIV-infected mice after low-level AFB1 exposure. 30196302 2018
Entrez Id: 10059
Gene Symbol: DNM1L
DNM1L
0.010 Biomarker disease BEFREE Here, we report that the SIV-infection led to dynamin-related protein 1 (DRP1) phosphorylation at serine 579 and mitochondrial fission in PAMs. 30096906 2018
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 AlteredExpression disease BEFREE Here we show that chronic simian immunodeficiency virus (SIV) infection is characterized by an expansion of either lymph node germinal center (GC) B cells that co-express Bcl6, Ki-67 and IL-21R and correlate with expanded T follicular helper (Tfh) cells or B cells that lack Bcl6, Ki-67 and IL-21R but express high levels of anti-apoptotic Bcl2 that negatively correlate with Tfh cells. 30191661 2018
Entrez Id: 7099
Gene Symbol: TLR4
TLR4
0.010 AlteredExpression disease BEFREE Further study showed that AFB<sub>1</sub> upregulated TLR4, but not other TLRs, in SIV-infected PAMs. 30337931 2018
Entrez Id: 3455
Gene Symbol: IFNAR2
IFNAR2
0.010 Biomarker disease BEFREE Previously, we demonstrated that administration of a type I interferon receptor antagonist (IFN-1ant) during acute SIV infection of rhesus macaques results in increased virus replication and accelerated disease progression. 30142226 2018
Entrez Id: 406994
Gene Symbol: MIR212
MIR212
0.010 AlteredExpression disease BEFREE Our findings suggest that dysregulated miR-130a and miR-212 expression in colonic epithelium during chronic HIV/SIV infection can facilitate epithelial barrier disruption by downregulating OCLN and PPARγ expression. 29514950 2018
Entrez Id: 3438
Gene Symbol: IFN1@
IFN1@
0.010 Biomarker disease BEFREE Thus, our data show that blocking IFN-I signaling during chronic SIV infection suppresses IFN-I-related inflammatory pathways without increasing virus replication, and thus may constitute a safe therapeutic intervention in chronic HIV infection. 30142226 2018
Entrez Id: 919
Gene Symbol: CD247
CD247
0.010 Biomarker disease BEFREE Simian immunodeficiency virus (SIV) infections further expand gut-homing adaptive NK cells but result in pathogenic suppression of CD3ζ-Zap70 signaling and function. 30517864 2018
Entrez Id: 643
Gene Symbol: CXCR5
CXCR5
0.010 Biomarker disease BEFREE Thus, CXCR5+ CD8 T cells represent a unique subset of antiviral CD8 T cells that expand in LNs during chronic SIV infection and may play a significant role in the control of pathogenic SIV infection. 28159893 2017
Entrez Id: 190
Gene Symbol: NR0B1
NR0B1
0.010 Biomarker disease BEFREE Dextran sulfate sodium (DSS-exposure) is an established animal model for experimental colitis that was recently shown to recapitulate the link between GI-tract damage and pathogenic features of SIV infection. 28687795 2017
Entrez Id: 10673
Gene Symbol: TNFSF13B
TNFSF13B
0.010 Biomarker disease BEFREE In this context, we paid a particular attention to B-cell-activating factor (BAFF), a key cytokine in B-cell development and immune response that is overproduced during HIV/SIV infection. 29163465 2017
Entrez Id: 440275
Gene Symbol: EIF2AK4
EIF2AK4
0.010 Biomarker disease BEFREE Suppression of protein synthesis and induction of protein kinase GCN2-ATF4 signaling were detected in the gut during acute SIV infection. 28465428 2017
Entrez Id: 2152
Gene Symbol: F3
F3
0.010 Biomarker disease BEFREE These data suggest that TF-expressing monocytes are at the epicenter of inflammation and coagulation in chronic HIV and SIV infection and may represent a potential therapeutic target. 28855397 2017
Entrez Id: 5376
Gene Symbol: PMP22
PMP22
0.010 Biomarker disease BEFREE Dextran sulfate sodium (DSS-exposure) is an established animal model for experimental colitis that was recently shown to recapitulate the link between GI-tract damage and pathogenic features of SIV infection. 28687795 2017
Entrez Id: 60
Gene Symbol: ACTB
ACTB
0.010 Biomarker disease BEFREE Th cells show an impaired response to chemotactic stimuli both in humans and in the pathogenic model of SIV infection, and this defect is due to hyperactivation of cofilin and inefficient actin polymerization. 27895171 2017
Entrez Id: 219670
Gene Symbol: ENKUR
ENKUR
0.010 GeneticVariation disease BEFREE Moreover, mutation of ENKUR causes situs inversus in humans. 29257953 2017