Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1234
Gene Symbol: CCR5
CCR5
0.050 Biomarker disease BEFREE Induction of inhibitory antibodies to the CCR5 chemokine receptor and their complementary role in preventing SIV infection in macaques. 10458756 1999
Entrez Id: 3107
Gene Symbol: HLA-C
HLA-C
0.040 GeneticVariation disease BEFREE In human immunodeficiency virus (HIV) and simian immunodeficiency virus (SIV) infections, host major histocompatibility complex class I (MHC-I) genotypes have a great impact on viral replication and MHC-I-associated viral genome mutations are selected under CD8<sup>+</sup> T-cell pressure. 30878187 2019
Entrez Id: 3107
Gene Symbol: HLA-C
HLA-C
0.040 Biomarker disease BEFREE We then discovered that vaccinated Chinese macaques developed a previously unrecognized class of non-cytolytic MHC-Ib/E-restricted CD8<sup>+</sup> T cells (or CD8<sup>+</sup> T-Regs) that suppressed the activation of SIV RNA-infected CD4<sup>+</sup> T cells and thereby inhibited the (activation-dependent) reverse transcription of the virus and prevented the establishment of SIV infection. 30043201 2018
Entrez Id: 3107
Gene Symbol: HLA-C
HLA-C
0.040 Biomarker disease BEFREE Multiple studies on human immunodeficiency virus and simian immunodeficiency virus (SIV) infection have indicated the association of major histocompatibility complex class I (MHC-I) genotypes with rapid or slow AIDS progression. 22491464 2012
Entrez Id: 3107
Gene Symbol: HLA-C
HLA-C
0.040 Biomarker disease BEFREE Inefficient Nef-mediated downmodulation of CD3 and MHC-I correlates with loss of CD4+T cells in natural SIV infection. 18636106 2008
Entrez Id: 5781
Gene Symbol: PTPN11
PTPN11
0.030 GeneticVariation disease BEFREE We checked 18 predicted sites in 30 SIV NS1 genes to exclude strain-specific sites, covering H1N1, H1N2 and H3N2 subtypes and identified two phosphorylation sites Y73 and S83 in the H1N1 SIV protein by Phos-tag SDS-PAGE analysis. 31805964 2019
Entrez Id: 10625
Gene Symbol: IVNS1ABP
IVNS1ABP
0.030 GeneticVariation disease BEFREE We checked 18 predicted sites in 30 SIV NS1 genes to exclude strain-specific sites, covering H1N1, H1N2 and H3N2 subtypes and identified two phosphorylation sites Y73 and S83 in the H1N1 SIV protein by Phos-tag SDS-PAGE analysis. 31805964 2019
Entrez Id: 3439
Gene Symbol: IFNA1
IFNA1
0.030 AlteredExpression disease BEFREE Unlike in acute SIV infection, we observed no significant increase in plasma viremia up to 25 weeks after IFN-1ant administration or up to 15 weeks after ART interruption. 30142226 2018
Entrez Id: 5781
Gene Symbol: PTPN11
PTPN11
0.030 Biomarker disease BEFREE However, little research has been reported regarding the swine influenza virus (SIV) NS1 protein. 29587786 2018
Entrez Id: 3447
Gene Symbol: IFNA13
IFNA13
0.030 AlteredExpression disease BEFREE Stage-specific IFN-induced and IFN gene expression reveal convergence of type I and type II IFN and highlight their role in both acute and chronic stage of pathogenic SIV infection. 29324751 2018
Entrez Id: 3439
Gene Symbol: IFNA1
IFNA1
0.030 Biomarker disease BEFREE Correction: Stage-specific IFN-induced and IFN gene expression reveal convergence of type I and type II IFN and highlight their role in both acute and chronic stage of pathogenic SIV infection. 29474456 2018
Entrez Id: 3447
Gene Symbol: IFNA13
IFNA13
0.030 Biomarker disease BEFREE Correction: Stage-specific IFN-induced and IFN gene expression reveal convergence of type I and type II IFN and highlight their role in both acute and chronic stage of pathogenic SIV infection. 29474456 2018
Entrez Id: 3439
Gene Symbol: IFNA1
IFNA1
0.030 AlteredExpression disease BEFREE Stage-specific IFN-induced and IFN gene expression reveal convergence of type I and type II IFN and highlight their role in both acute and chronic stage of pathogenic SIV infection. 29324751 2018
Entrez Id: 10625
Gene Symbol: IVNS1ABP
IVNS1ABP
0.030 Biomarker disease BEFREE However, little research has been reported regarding the swine influenza virus (SIV) NS1 protein. 29587786 2018
Entrez Id: 3447
Gene Symbol: IFNA13
IFNA13
0.030 AlteredExpression disease BEFREE Unlike in acute SIV infection, we observed no significant increase in plasma viremia up to 25 weeks after IFN-1ant administration or up to 15 weeks after ART interruption. 30142226 2018
Entrez Id: 27130
Gene Symbol: INVS
INVS
0.030 GeneticVariation disease BEFREE Mutations in the INVS gene coding for inversin have been identified in patients with nephronophthisis type 2 (NPHP2), typically causing infantile onset of ESRD and potentially associated with situs inversus. 20798123 2010
Entrez Id: 27130
Gene Symbol: INVS
INVS
0.030 GeneticVariation disease BEFREE Association of INVS (NPHP2) mutation in an adolescent exhibiting nephronophthisis (NPH) and complete situs inversus. 18218308 2008
Entrez Id: 5781
Gene Symbol: PTPN11
PTPN11
0.030 Biomarker disease BEFREE These data suggest that the NS1 protein of SIV is a virulence factor. 15919908 2005
Entrez Id: 10625
Gene Symbol: IVNS1ABP
IVNS1ABP
0.030 Biomarker disease BEFREE These data suggest that the NS1 protein of SIV is a virulence factor. 15919908 2005
Entrez Id: 27130
Gene Symbol: INVS
INVS
0.030 GeneticVariation disease BEFREE Here, we identify inversin (INVS) as the gene mutated in NPHP2 with and without situs inversus. 12872123 2003
Entrez Id: 3106
Gene Symbol: HLA-B
HLA-B
0.020 GeneticVariation disease BEFREE We have previously established an AIDS model of simian immunodeficiency virus (SIV) infection in Burmese rhesus macaques and found a potent CD8<sup>+</sup> T cell targeting the Mamu-A1*065:01-restricted Gag<sub>241-249</sub> epitope, which is located in a region corresponding to the HIV Gag<sub>240-249</sub> TW10 epitope restricted by a protective MHC-I allele, HLA-B*57. 31711644 2020
Entrez Id: 55329
Gene Symbol: MNS1
MNS1
0.020 GeneticVariation disease BEFREE MNS1 variant associated with situs inversus and male infertility. 31534215 2020
Entrez Id: 115948
Gene Symbol: CCDC151
CCDC151
0.020 GeneticVariation disease BEFREE In addition, to the best of our knowledge, the present study was the first to report a CCDC151 mutation in primary ciliary dyskinesia patients with situs inversus in mainland China. 30504913 2019
Entrez Id: 3600
Gene Symbol: IL15
IL15
0.020 Biomarker disease BEFREE To understand the role of IL-15 in SIV infection and pathogenesis, we treated two cohorts of SIVmac239-infected rhesus macaques (RM; <i>Macaca mulatta</i>), one with chronic infection, the other with primary infection, with a rhesusized, IL-15-neutralizing mAb (versus an IgG isotype control) for up to 10 wk (<i>n</i> = 7-9 RM per group). 31653683 2019
Entrez Id: 10410
Gene Symbol: IFITM3
IFITM3
0.020 GeneticVariation disease BEFREE These results and our previous work suggest that polymorphisms in the rhIFITM3 and rhIFITM3(2) genes do not strongly modulate the course of SIV infection in macaques. 31682595 2019