Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE In the present study we performed mutational analysis of the entire coding region of the SHH gene in 37 unrelated individuals with the HPE spectrum. 19398181 2010
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Our findings show that variations in Six3 dosage result in different forms of HPE. 27770010 2016
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE Our data indicate that SIX3 is a frequent target in the pathogenesis of HPE and demonstrate how this can inform the genetic counseling of families. 18791198 2008
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE We studied two genes, Sonic Hedgehog (SHH) and SIX3, in which mutations have been reported in patients showing SMMCI as part of the HPE spectrum. 11471164 2001
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease LHGDN Here, we analyze seven reported missense mutations (G31R, D88V, Q100H, N115K, W117G, W117R, and E188Q) that alter the N-terminal signaling domain of Shh protein, and show that two of these mutations (Q100H and E188Q), which are questionably linked to HPE, produce no detectable effects on function. 16282375 2005
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE A novel heterozygous missense mutation 377T > C (V126A) of TGIF gene in a family segregated with holoprosencephaly and moyamoya disease. 16475235 2006
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease LHGDN These results provide further evidence of a role for TGIF in HPE and demonstrate the importance of functional analysis of putative disease-associated alleles. 16962354 2007
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE We report 22 patients with normal neuropsychological development and a holoprosencephaly-like (HPE-like) phenotype screened for SHH, SIX3, TGIF, and GLI2. 17001669 2006
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease GENOMICS_ENGLAND Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly. 12032320 2002
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE These results demonstrate physical and functional association between EYA4 and SIX3, suggesting that EYA4 is a novel candidate gene of HPE, whose haploinsufficiency leads to HPE through the compromised function of SIX3. 19606496 2009
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE The mutational spectrum of holoprosencephaly-associated changes within the SHH gene in humans predicts loss-of-function through either key structural alterations of the ligand or its altered synthesis. 19603532 2009
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE TGIF1 is a transcriptional repressor that limits the output of the Transforming Growth Factor ß (TGFß)/Nodal signaling pathway, and HPE in patients with TGIF1 variants has been suggested to be due to increased Nodal signaling. 27924807 2017
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease GENOMICS_ENGLAND
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE Sequencing of the CDON, SHH, ZIC2, SIX3, and TGIF genes (associated with holoprosencephaly) did not disclose pathogenic alterations. 21995818 2012
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Mutations in the Sonic Hedgehog (SHH) gene result in HPE in humans and mice, and the Shh pathway is targeted by other mutations that cause HPE. 22383895 2012
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Heterozygous GLI2 loss of function mutations in humans have been reported in holoprosencephaly (HPE), HPE-like phenotypes associated with pituitary anomalies and combined pituitary hormone deficiency with or without other extra-pituitary findings. 30548673 2019
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Frank holoprosencephaly was present in 11 individuals with deletions of one of the common HPE genes SHH, ZIC2, SIX3, and TGIF1, in one individual with a deletion of the HPE8 locus at 14q13, and in one individual with a deletion of FGF8, whereas deletions of other HPE loci and candidate genes (FOXA2 and LRP2) expressed microforms of HPE. 20066439 2010
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Our study provides structural insights of the probable pathogenesis mechanism of two TGIF1-related HPE cases, and evidences for the roles of P192 and R219 in HD folding. 29355528 2018
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE We performed mutational analysis in the four main HPE causing genes (SHH, SIX3, TGIF, and ZIC2) and GLI3, a gene associated with polydactyly as well as fluorescent in situ hybridization (FISH) to search for microdeletions in these genes and two candidate HPE genes (DISP1 and FOXA2). 18178536 2008
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease CTD_human The inhibitors of the NODAL and SHH pathways, even at low concentration, acted synergistically to promote an HPE-like phenotype. 23264560 2013
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 AlteredExpression disease BEFREE We considered LS an excellent candidate HPE gene because of the requirement for cholesterol modification of the Sonic Hedgehog protein for the correct patterning activity of this HPE-associated protein. 10598817 1999
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 CausalMutation disease CLINVAR
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE We identified a de novo nucleotide change, c.301-19G > A, in intron 1 of SHH in a four year old boy with a microform of holoprosencephaly. 21044704 2011
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE We report 22 patients with normal neuropsychological development and a holoprosencephaly-like (HPE-like) phenotype screened for SHH, SIX3, TGIF, and GLI2. 17001669 2006
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE The unfolding clinical spectrum of holoprosencephaly due to mutations in SHH, ZIC2, SIX3 and TGIF genes. 20531442 2010