Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE In the present study we performed mutational analysis of the entire coding region of the SHH gene in 37 unrelated individuals with the HPE spectrum. 19398181 2010
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Our findings show that variations in Six3 dosage result in different forms of HPE. 27770010 2016
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE We studied two genes, Sonic Hedgehog (SHH) and SIX3, in which mutations have been reported in patients showing SMMCI as part of the HPE spectrum. 11471164 2001
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease LHGDN Here, we analyze seven reported missense mutations (G31R, D88V, Q100H, N115K, W117G, W117R, and E188Q) that alter the N-terminal signaling domain of Shh protein, and show that two of these mutations (Q100H and E188Q), which are questionably linked to HPE, produce no detectable effects on function. 16282375 2005
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE A novel heterozygous missense mutation 377T > C (V126A) of TGIF gene in a family segregated with holoprosencephaly and moyamoya disease. 16475235 2006
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease LHGDN These results provide further evidence of a role for TGIF in HPE and demonstrate the importance of functional analysis of putative disease-associated alleles. 16962354 2007
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE The mutational spectrum of holoprosencephaly-associated changes within the SHH gene in humans predicts loss-of-function through either key structural alterations of the ligand or its altered synthesis. 19603532 2009
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Mutations in the Sonic Hedgehog (SHH) gene result in HPE in humans and mice, and the Shh pathway is targeted by other mutations that cause HPE. 22383895 2012
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Heterozygous GLI2 loss of function mutations in humans have been reported in holoprosencephaly (HPE), HPE-like phenotypes associated with pituitary anomalies and combined pituitary hormone deficiency with or without other extra-pituitary findings. 30548673 2019
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Frank holoprosencephaly was present in 11 individuals with deletions of one of the common HPE genes SHH, ZIC2, SIX3, and TGIF1, in one individual with a deletion of the HPE8 locus at 14q13, and in one individual with a deletion of FGF8, whereas deletions of other HPE loci and candidate genes (FOXA2 and LRP2) expressed microforms of HPE. 20066439 2010
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE We performed mutational analysis in the four main HPE causing genes (SHH, SIX3, TGIF, and ZIC2) and GLI3, a gene associated with polydactyly as well as fluorescent in situ hybridization (FISH) to search for microdeletions in these genes and two candidate HPE genes (DISP1 and FOXA2). 18178536 2008
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE The unfolding clinical spectrum of holoprosencephaly due to mutations in SHH, ZIC2, SIX3 and TGIF genes. 20531442 2010
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE Holoprosencephaly (HPE) is genetically heterogeneous with four genes, SIX3, SHH, TGIF, and ZIC2 that have been identified to date and that are altered in 12% of patients. 11479728 2001
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE We report here that whereas mice lacking the Cdo paralog Boc do not have HPE, Cdo;Boc double mutants on a largely Cdo-resistant genetic background have lobar HPE with strong craniofacial anomalies and defects in Shh target gene expression in the developing forebrain. 21183473 2011
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Mutations in the SHH gene are the most common cause of sporadic and inherited holoprosencephaly (HPE), a developmental disorder that is characterized by defective prosencephalon development. 19057928 2009
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease LHGDN We investigated 127 HPE probands by sequencing their TGIF gene and identified the first nonsense mutation reported so far and also a novel missense mutation, in two families that presented a large range of disease severity. 12522553 2003
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE These functions are very likely conserved among bilaterians since vertebrate six3 is required for neuroendocrine and median brain development with certain mutations leading to holoprosencephaly. 22216011 2011
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Holoprosencephaly (HPE) is genetically heterogeneous with four genes, SIX3, SHH, TGIF, and ZIC2 that have been identified to date and that are altered in 12% of patients. 11479728 2001
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Mutations in GLI2 have been found in association with holoprosencephaly (HPE) and HPE-like phenotype, with and without pituitary hormone deficiencies; as well as in patients with pituitary dysfunction with and without HPE craniofacial features. 23304807 2012
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Holoprosencephaly and sacral dysgenesis are found in association with this deletion, due to haploinsufficiency of SHH and HLBX9 genes respectively. 27614115 2016
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Numerous genetic loci and environmental factors are implicated in HPE, but mutation in the sonic hedgehog (Shh) gene is an established cause in both humans and mice. 17525797 2007
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease LHGDN We demonstrate that two SHH mutations that cause human HPE result in decreased in vivo activity of SHH in the developing nervous system. 12709790 2003
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease LHGDN Functional characterization of sonic hedgehog mutations associated with holoprosencephaly. 15292211 2004
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Our data indicate that in a subset of patients SCH may develop as one aspect of a more complex malformation of the ventral forebrain, directly result from mutations in the SHH pathway and hence be considered as yet another feature of the broad phenotypic spectrum of holoprosencephaly. 20157829 2010
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE However, the family presented here is unique as none of the three identified individuals with a GLI2 deletion showed any typical signs of holoprosencephaly, whereas all patients reported so far were referred for genetic testing because at least one member exhibited holoprosencephaly and related features. 25820550 2015