Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE In the present study we performed mutational analysis of the entire coding region of the SHH gene in 37 unrelated individuals with the HPE spectrum. 19398181 2010
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Our findings show that variations in Six3 dosage result in different forms of HPE. 27770010 2016
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE Our data indicate that SIX3 is a frequent target in the pathogenesis of HPE and demonstrate how this can inform the genetic counseling of families. 18791198 2008
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE We studied two genes, Sonic Hedgehog (SHH) and SIX3, in which mutations have been reported in patients showing SMMCI as part of the HPE spectrum. 11471164 2001
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE A novel heterozygous missense mutation 377T > C (V126A) of TGIF gene in a family segregated with holoprosencephaly and moyamoya disease. 16475235 2006
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE We report 22 patients with normal neuropsychological development and a holoprosencephaly-like (HPE-like) phenotype screened for SHH, SIX3, TGIF, and GLI2. 17001669 2006
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE These results demonstrate physical and functional association between EYA4 and SIX3, suggesting that EYA4 is a novel candidate gene of HPE, whose haploinsufficiency leads to HPE through the compromised function of SIX3. 19606496 2009
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE The mutational spectrum of holoprosencephaly-associated changes within the SHH gene in humans predicts loss-of-function through either key structural alterations of the ligand or its altered synthesis. 19603532 2009
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE TGIF1 is a transcriptional repressor that limits the output of the Transforming Growth Factor ß (TGFß)/Nodal signaling pathway, and HPE in patients with TGIF1 variants has been suggested to be due to increased Nodal signaling. 27924807 2017
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE Sequencing of the CDON, SHH, ZIC2, SIX3, and TGIF genes (associated with holoprosencephaly) did not disclose pathogenic alterations. 21995818 2012
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Mutations in the Sonic Hedgehog (SHH) gene result in HPE in humans and mice, and the Shh pathway is targeted by other mutations that cause HPE. 22383895 2012
Entrez Id: 2736
Gene Symbol: GLI2
GLI2
0.700 GeneticVariation disease BEFREE Heterozygous GLI2 loss of function mutations in humans have been reported in holoprosencephaly (HPE), HPE-like phenotypes associated with pituitary anomalies and combined pituitary hormone deficiency with or without other extra-pituitary findings. 30548673 2019
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 GeneticVariation disease BEFREE Frank holoprosencephaly was present in 11 individuals with deletions of one of the common HPE genes SHH, ZIC2, SIX3, and TGIF1, in one individual with a deletion of the HPE8 locus at 14q13, and in one individual with a deletion of FGF8, whereas deletions of other HPE loci and candidate genes (FOXA2 and LRP2) expressed microforms of HPE. 20066439 2010
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Our study provides structural insights of the probable pathogenesis mechanism of two TGIF1-related HPE cases, and evidences for the roles of P192 and R219 in HD folding. 29355528 2018
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE We performed mutational analysis in the four main HPE causing genes (SHH, SIX3, TGIF, and ZIC2) and GLI3, a gene associated with polydactyly as well as fluorescent in situ hybridization (FISH) to search for microdeletions in these genes and two candidate HPE genes (DISP1 and FOXA2). 18178536 2008
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 AlteredExpression disease BEFREE We considered LS an excellent candidate HPE gene because of the requirement for cholesterol modification of the Sonic Hedgehog protein for the correct patterning activity of this HPE-associated protein. 10598817 1999
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE We identified a de novo nucleotide change, c.301-19G > A, in intron 1 of SHH in a four year old boy with a microform of holoprosencephaly. 21044704 2011
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE We report 22 patients with normal neuropsychological development and a holoprosencephaly-like (HPE-like) phenotype screened for SHH, SIX3, TGIF, and GLI2. 17001669 2006
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE The unfolding clinical spectrum of holoprosencephaly due to mutations in SHH, ZIC2, SIX3 and TGIF genes. 20531442 2010
Entrez Id: 6496
Gene Symbol: SIX3
SIX3
0.700 Biomarker disease BEFREE In humans, SIX3 haploinsufficiency results in holoprosencephaly, a defect in anterior midline formation. 28093895 2017
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 GeneticVariation disease BEFREE Holoprosencephaly (HPE) is genetically heterogeneous with four genes, SIX3, SHH, TGIF, and ZIC2 that have been identified to date and that are altered in 12% of patients. 11479728 2001
Entrez Id: 7050
Gene Symbol: TGIF1
TGIF1
0.700 Biomarker disease BEFREE Tgif1 and Tgif2 are transcriptional repressors that limit Transforming Growth Factor β/Nodal signaling, and we show that reducing Nodal signaling in embryos lacking both Tgifs reduces the severity of HPE and partially restores the output of Shh signaling. 22383895 2012
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE We report here that whereas mice lacking the Cdo paralog Boc do not have HPE, Cdo;Boc double mutants on a largely Cdo-resistant genetic background have lobar HPE with strong craniofacial anomalies and defects in Shh target gene expression in the developing forebrain. 21183473 2011
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 GeneticVariation disease BEFREE Mutations in the SHH gene are the most common cause of sporadic and inherited holoprosencephaly (HPE), a developmental disorder that is characterized by defective prosencephalon development. 19057928 2009
Entrez Id: 6469
Gene Symbol: SHH
SHH
0.700 Biomarker disease BEFREE The genetic causes of HPE have recently begun to be identified, and we have previously shown that HPE can be caused by haploinsufficiency for SONIC HEDGEHOG ( SHH). 11941477 2002