Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5077
Gene Symbol: PAX3
PAX3
0.010 AlteredExpression group BEFREE PAX3 expression in primary melanomas and nevi. 18327212 2008
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.050 GeneticVariation group BEFREE BRAF mutations in melanocytic tumors (nevi and melanomas) from organ transplant recipients. 19919912 2010
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.050 GeneticVariation group BEFREE Proto-oncogene B-Raf (BRAF) mutation rates have been reported in nevi and melanomas of homogeneous Caucasian cohorts. 23906414 2014
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.050 GeneticVariation group BEFREE BRAF mutation status distinctly differs between BRAFi-MLs from melanomas and nevi biopsied in patients who do not receive BRAFi therapy. 26997441 2016
Entrez Id: 6502
Gene Symbol: SKP2
SKP2
0.010 Biomarker group BEFREE Analysis of 25 samples of normal human skin, nevi, and melanomas revealed a positive correlation between c-Myc and SKP2 accumulation. 23792459 2014
Entrez Id: 5894
Gene Symbol: RAF1
RAF1
0.020 GeneticVariation group BEFREE BRAF is a gene of the RAF family of kinases, frequently mutated in benign and malignant melanocytic tumors (nevi and melanomas). 19919912 2010
Entrez Id: 22882
Gene Symbol: ZHX2
ZHX2
0.010 GeneticVariation group BEFREE BRAF is a gene of the RAF family of kinases, frequently mutated in benign and malignant melanocytic tumors (nevi and melanomas). 19919912 2010
Entrez Id: 6657
Gene Symbol: SOX2
SOX2
0.010 AlteredExpression group BEFREE By querying publicly available databases, we did not find statistically significant differences in SOX2 expression levels between benign nevi and melanomas, and analysis on two melanoma patient cohorts confirmed that Sox2 levels did not significantly change between primary and metastatic melanomas. 28368402 2017
Entrez Id: 3479
Gene Symbol: IGF1
IGF1
0.010 AlteredExpression group BEFREE Expression of insulin-like growth factor I (IGF-I) in nevi and melanomas. 7978067 1994
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.010 AlteredExpression group BEFREE Gene expression profiling study of nevi and melanomas showed that p53 target genes were differentially expressed in melanomas compared with nevi, suggesting a dysfunctional p53 pathway in melanoma in vivo. 19389934 2009
Entrez Id: 8314
Gene Symbol: BAP1
BAP1
0.300 Biomarker group CTD_human Germline mutations in BAP1 predispose to melanocytic tumors. 21874003 2011
Entrez Id: 5728
Gene Symbol: PTEN
PTEN
0.010 GeneticVariation group BEFREE High frequency of PTEN mutations in nevi and melanomas from xeroderma pigmentosum patients. 24483290 2014
Entrez Id: 1977
Gene Symbol: EIF4E
EIF4E
0.010 AlteredExpression group BEFREE Immunohistochemistry was used to analyze the expression of eIF-2alpha, eIF-4E, and cyclin D1 in melanocytic nevi and melanomas and the expression of eIF-2alpha in colonic adenomas and carcinomas. 12942578 2003
Entrez Id: 595
Gene Symbol: CCND1
CCND1
0.020 AlteredExpression group BEFREE Immunohistochemistry was used to analyze the expression of eIF-2alpha, eIF-4E, and cyclin D1 in melanocytic nevi and melanomas and the expression of eIF-2alpha in colonic adenomas and carcinomas. 12942578 2003
Entrez Id: 1965
Gene Symbol: EIF2S1
EIF2S1
0.010 AlteredExpression group BEFREE Immunohistochemistry was used to analyze the expression of eIF-2alpha, eIF-4E, and cyclin D1 in melanocytic nevi and melanomas and the expression of eIF-2alpha in colonic adenomas and carcinomas. 12942578 2003
Entrez Id: 406991
Gene Symbol: MIR21
MIR21
0.010 AlteredExpression group BEFREE ISH with digital quantification showed expression of miR-21 and miR-125b in the melanocytic lesions. miR-21 ISH was increased in melanomas, whereas quantification of miR-125b showed uniform ISH expression across nevi and melanomas. 28614272 2017
Entrez Id: 3815
Gene Symbol: KIT
KIT
0.010 GeneticVariation group BEFREE No KIT gene mutations were detected in melanomas and nevi. 23742652 2013
Entrez Id: 672
Gene Symbol: BRCA1
BRCA1
0.010 Biomarker group BEFREE Novel deletion loci at 5q35 and 17q21 (BRCA1) in atypical nevi and melanomas were identified. 19461239 2009
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.050 GeneticVariation group BEFREE Research has shown that a majority of melanomas and nevi exhibit an activating V600E (T1799A) mutation in BRAF exon 15. 15811117 2005
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.050 GeneticVariation group BEFREE Somatic mutations of the BRAF gene are common in melanomas and nevi but the contribution of polymorphisms in this gene to melanoma or nevus susceptibility remains unclear. 16354196 2005
Entrez Id: 317
Gene Symbol: APAF1
APAF1
0.010 Biomarker group BEFREE The immunohistochemical analysis revealed a significant difference in APAF-1 staining between nevi and melanomas. 15009102 2004
Entrez Id: 23705
Gene Symbol: CADM1
CADM1
0.010 AlteredExpression group BEFREE These findings allow us to conclude that the immunohistochemical expression of CADM1 has the potential to contribute as an auxiliary tool to the differential diagnosis between nevi and melanomas. 28843749 2017
Entrez Id: 358
Gene Symbol: AQP1
AQP1
0.010 Biomarker group BEFREE Tumoral melanocytes in atypical nevi and melanomas were negative for AQP1. 31305898 2019
Entrez Id: 9260
Gene Symbol: PDLIM7
PDLIM7
0.010 AlteredExpression group BEFREE We conclude that the vast majority of nevi and melanomas express a still uncharacterised molecule, cross-reacting with anti-LMP1 (CS1-4) antibodies, which may be considered a consistent marker of melanocytic proliferations. 10917168 2000
Entrez Id: 10437
Gene Symbol: IFI30
IFI30
0.010 AlteredExpression group BEFREE We evaluated GILT and MHC class II expression in human primary and metastatic melanomas and nevi using immunohistochemical analysis. 26930048 2016