Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 10236
Gene Symbol: HNRNPR
HNRNPR
0.010 Biomarker disease BEFREE Here, we report four unrelated individuals who have truncating or missense variants in the same C-terminal region of hnRNPR and who have multisystem developmental defects including abnormalities of the brain and skeleton, dysmorphic facies, brachydactyly, seizures, and hypoplastic external genitalia. 31079900 2019
Entrez Id: 25914
Gene Symbol: RTTN
RTTN
0.010 GeneticVariation disease BEFREE Herein, we report on a consanguineous family with three adult members, age 43, 57, and 60 years respectively, with primary microcephaly, developmental delay, primordial dwarfism, and brachydactyly segregating a homozygous splice site variant NM_173630.3:c.5648-5T>A in RTTN. 30927481 2019
Entrez Id: 8321
Gene Symbol: FZD1
FZD1
0.010 Biomarker disease BEFREE Our results indicate that FZD1 could be involved in the pathological process of phalanges tuberositas and brachydactylia and may provide new insight into the pathogenesis of articular cartilage destruction observed in patients with KBD. 30719180 2019
Entrez Id: 55278
Gene Symbol: QRSL1
QRSL1
0.010 GeneticVariation disease BEFREE Our findings, in addition to identifying the genetic cause of brachydactyly in two unrelated kindreds, emphasize the role of pathogenic TRPS1 variants in the development of brachydactyly type E and highlight the GATA DNA-binding region of TRPS1 protein with respect to phenotype-genotype correlation. 30914275 2019
Entrez Id: 6046
Gene Symbol: BRD2
BRD2
0.010 Biomarker disease BEFREE PHP-Ia and PHP-Ic are characterized by: End-organ resistance to endocrine hormones including parathyroid hormone (PTH), thyroid-stimulating hormone (TSH), gonadotropins (LH and FSH), growth hormone-releasing hormone (GHRH), and CNS neurotransmitters (leading to obesity and variable degrees of intellectual disability and developmental delay); and The Albright hereditary osteodystrophy (AHO) phenotype (short stature, round facies, and subcutaneous ossifications) and brachydactyly type E (shortening mainly of the 4th and/or 5th metacarpals and metatarsals and distal phalanx of the thumb). 30581325 2017
Entrez Id: 2296
Gene Symbol: FOXC1
FOXC1
0.010 AlteredExpression disease BEFREE The duplication involves the gene FOXC1, expressed during the osteoblast differentiation, which appears a potential candidate gene for brachydactyly. 28111183 2017
Entrez Id: 80144
Gene Symbol: FRAS1
FRAS1
0.010 GeneticVariation disease BEFREE We note severe brachydactyly is a manifestation of Fraser syndrome and found a novel homozygous splice site variation c.3293-2A>T in FRAS1. 27624506 2017
Entrez Id: 26278
Gene Symbol: SACS
SACS
0.010 GeneticVariation disease BEFREE Specifically, the twins described by Fitzsimmons had heterozygous mutations in the SACS gene, the gene responsible for autosomal recessive spastic ataxia of Charlevoix Saguenay (ARSACS), as well as a heterozygous mutation in the TRPS1, the gene responsible in Trichorhinophalangeal syndrome type 1 (TRPS1 type 1) which includes brachydactyly as a feature. 27133561 2016
Entrez Id: 79718
Gene Symbol: TBL1XR1
TBL1XR1
0.010 GeneticVariation disease BEFREE A TBL1XR1 mutation was identified in the patient described in 2009 as contributing to his cognitive impairment and autistic features with no genetic cause identified for his spasticity or brachydactyly. 27133561 2016
Entrez Id: 81792
Gene Symbol: ADAMTS12
ADAMTS12
0.010 GeneticVariation disease BEFREE In addition, several skeletal abnormalities classified as brachydactyly type A1B (BDA1B) were present in the proband and in both carriers of t(5;7)(p13.3;p22.2), suggesting a potential role of ADAMTS12 in the development of the BDA1B observed in this family. 25756154 2015
Entrez Id: 246260
Gene Symbol: BDA1B
BDA1B
0.010 GeneticVariation disease BEFREE In addition, several skeletal abnormalities classified as brachydactyly type A1B (BDA1B) were present in the proband and in both carriers of t(5;7)(p13.3;p22.2), suggesting a potential role of ADAMTS12 in the development of the BDA1B observed in this family. 25756154 2015
Entrez Id: 170691
Gene Symbol: ADAMTS17
ADAMTS17
0.010 GeneticVariation disease BEFREE Mutations in the LTBP2 and ADAMTS17 genes cause a WMS-like syndrome, in which the affected individuals show major features of WMS but do not display brachydactyly and joint stiffness. 24940034 2014
Entrez Id: 427
Gene Symbol: ASAH1
ASAH1
0.010 Biomarker disease BEFREE TRPS was mistakenly identified as PHP/PPHP because of the coexistence of obesity and brachydactyly, with PTH resistance in one of the cases. 24945424 2014
Entrez Id: 29085
Gene Symbol: PHPT1
PHPT1
0.010 Biomarker disease BEFREE TRPS was mistakenly identified as PHP/PPHP because of the coexistence of obesity and brachydactyly, with PTH resistance in one of the cases. 24945424 2014
Entrez Id: 6658
Gene Symbol: SOX3
SOX3
0.010 Biomarker disease BEFREE TRPS was mistakenly identified as PHP/PPHP because of the coexistence of obesity and brachydactyly, with PTH resistance in one of the cases. 24945424 2014
Entrez Id: 23569
Gene Symbol: PADI4
PADI4
0.010 Biomarker disease BEFREE RA patients with BD had reduced erosion on hand radiographs (OR=0.57, 95% CI: 0.34-0.95, p=0.029) adjusted for age, sex, disease duration, smoking, RF, anti-CCP, SE, and PADI4. 21802972 2012
Entrez Id: 1421
Gene Symbol: CRYGD
CRYGD
0.010 Biomarker disease BEFREE RA patients with BD had reduced erosion on hand radiographs (OR=0.57, 95% CI: 0.34-0.95, p=0.029) adjusted for age, sex, disease duration, smoking, RF, anti-CCP, SE, and PADI4. 21802972 2012
Entrez Id: 3123
Gene Symbol: HLA-DRB1
HLA-DRB1
0.010 Biomarker disease BEFREE The presence of BD on hand radiographs, rheumatoid factor (RF), anti-cyclic citrullinated peptide antibody (anti-CCP), HLA-DRB1 shared epitopes (SE), risk haplotypes of peptidyl deiminase type IV (PADI4) and erosive joint stage, and smoking status, were determined. 21802972 2012
Entrez Id: 6850
Gene Symbol: SYK
SYK
0.010 Biomarker disease BEFREE The deletion does not involve the PTCH1 gene, but instead 30 other gene,s including the ROR2 gene (MIM *602337) which causing both brachydactyly type 1 (MIM #113000) and Robinow syndrome (MIM #268310), and the immunologically active SYK gene (MIM *600085). 21693067 2011
Entrez Id: 9312
Gene Symbol: KCNB2
KCNB2
0.010 GeneticVariation disease BEFREE We studied a family with autosomal-dominant Brachydactyly Type E (BDE) and identified a t(8;12)(q13;p11.2) translocation with breakpoints (BPs) upstream of PTHLH on chromosome 12p11.2 and a disrupted KCNB2 on 8q13. 20015959 2010
Entrez Id: 1278
Gene Symbol: COL1A2
COL1A2
0.010 GeneticVariation disease BEFREE Osteogenesis imperfecta type III with intracranial hemorrhage and brachydactyly associated with mutations in exon 49 of COL1A2. 19208385 2009
Entrez Id: 26121
Gene Symbol: PRPF31
PRPF31
0.010 Biomarker disease BEFREE These findings when compared to previous observations allowed us to narrow down the brachydactyly critical region between BACs RP11-585E12 and RP11-351E10. 16762827 2006
Entrez Id: 11315
Gene Symbol: PARK7
PARK7
0.010 GeneticVariation disease BEFREE Analysis of hand-bone length showed incomplete segregation of the PARK7 region with brachydactyly, such that a gene in PARK7 is unlikely to fully explain the brachydactyly. 15368505 2004
Entrez Id: 2817
Gene Symbol: GPC1
GPC1
0.010 Biomarker disease BEFREE Given the expression pattern in the developing limb bud, Glypican 1 gene represents a good candidate for brachydactyly E. 11920836 2002
Entrez Id: 2181
Gene Symbol: ACSL3
ACSL3
0.010 GeneticVariation disease BEFREE Saethre-Chotzen syndrome (acrocephalo-syndactyly type III, ACS III) is an autosomal dominant craniosynostosis with brachydactyly, soft tissue syndactyly and facial dysmorphism including ptosis, facial asymmetry and prominent ear crura. 8988167 1997