Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.800 GeneticVariation group BEFREE Significantly enriched in high-risk MDS (in comparison to low-risk MDS), TP53, GATA2, KRAS, RUNX1, STAG2, ASXL1, ZRSR2 and TET2 mutations (type 2) had a weaker impact on sAML progression and overall survival than type-1 mutations. 27992414 2017
Entrez Id: 171023
Gene Symbol: ASXL1
ASXL1
0.800 GeneticVariation group BEFREE In the phase III MDS-005 study of patients with lower-risk, non-del(5q) myelodysplastic syndromes, lenalidomide was associated with a higher rate of ≥ 8 weeks red blood cell transfusion independence (RBC-TI) compared with placebo, but also with a higher risk of hematologic adverse events (AEs). 30770308 2019
Entrez Id: 23451
Gene Symbol: SF3B1
SF3B1
0.800 GeneticVariation group BEFREE In contrast, dysplastic features correlated with mutations usually encountered in MDS (for example, SF3B1 and U2AF1). 28555081 2017
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.800 GeneticVariation group BEFREE From this analysis, we identified a novel case of a donor-derived myelodysplastic syndrome in an HSCT recipient that is consistent with clonal evolution of TET2-mutated clonal hematopoiesis of indeterminate potential (CHIP) within the donor. 27497531 2016
Entrez Id: 23451
Gene Symbol: SF3B1
SF3B1
0.800 GeneticVariation group BEFREE Another significant advance in MDS pathogenesis research is the recent identification of mutations in genes encoding transcription factors implicated in hematopoiesis and proteins involved in splicing (SF3B1), methylation (DNMT3A), regulation of methylation (TET2 and IDH), DNA conformation (EZH2 and ASXL1) and differentiation (N- and K-RAS). 23394086 2013
Entrez Id: 23451
Gene Symbol: SF3B1
SF3B1
0.800 GeneticVariation group BEFREE Genotype-phenotype correlations have been observed, including the clustering of ring sideroblasts with SF3B1 mutations in MDS. 23327988 2012
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.800 GeneticVariation group BEFREE Genetic predispositions to myeloid malignancies can be classified into three categories: familial cancer syndromes associated with increased risk of various malignancies including myelodysplasia and acute myeloid leukemia such as Li-Fraumeni syndrome and constitutional mismatch repair deficiency (CMMRD); germline mutations conferring a specific increased risk of myelodysplastic syndrome and acute myeloid leukemia such as mutations in ANKRD26, CEBPA, DDX41, ETV6, GATA2, RUNX1, SRP72 genes; and finally primarily pediatric inherited bone marrow failure syndromes such as Fanconi anemia, dyskeratosis congenita, severe congenital neutropenia, Shwachman-Diamond syndrome and Diamond Blackfan anemia. 31203998 2019
Entrez Id: 23451
Gene Symbol: SF3B1
SF3B1
0.800 GeneticVariation group BEFREE Inappropriately low hepcidin levels in patients with myelodysplastic syndrome carrying a somatic mutation of SF3B1. 23300182 2013
Entrez Id: 23451
Gene Symbol: SF3B1
SF3B1
0.800 GeneticVariation group BEFREE RNA-sequencing analysis of SF3B1 mutants showed differentially used genes relevant in MDS pathogenesis, such as ASXL1, CBL, EZH, and RUNX families. 22826563 2012
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.800 Biomarker group BEFREE Some mutations are specific for certain categories of MDS while others, such as TET2 seem to occur across the various categories. 20211165 2010
Entrez Id: 23451
Gene Symbol: SF3B1
SF3B1
0.800 GeneticVariation group BEFREE SF3B1, which encodes an essential spliceosomal protein, is frequently mutated in myelodysplastic syndromes (MDS) and many cancers. 31474574 2019
Entrez Id: 171023
Gene Symbol: ASXL1
ASXL1
0.800 GeneticVariation group BEFREE These data suggest ASXL1 mutations might results in dominance of the mutant clone in Chinese with MDS whereas EZH2 mutations might predict an increased risk of transformation to AML. 23099237 2013
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.800 SusceptibilityMutation group CLINVAR
Entrez Id: 23451
Gene Symbol: SF3B1
SF3B1
0.800 GeneticVariation group BEFREE Ring sideroblasts (RS) emerge as result of aberrant erythroid differentiation leading to excessive mitochondrial iron accumulation, a characteristic feature for myelodysplastic syndromes (MDS) with mutations in the spliceosome gene SF3B1. 31648334 2019
Entrez Id: 171023
Gene Symbol: ASXL1
ASXL1
0.800 GeneticVariation group BEFREE Contrary to previous reports, we found no association between TET2 mutations and HMA treatment response (40% vs 41%; P = 0.9), even in the absence of ASXL1 mutations (P = 0.4).We conclude that ASXL1 mutations in MDS predict inferior response to treatment with both HMAs and LEN; response to LEN was also compromised by U2AF1 mutations and high risk karyotype; SF3B1 mutations identified patients likely to respond to LEN. 30152885 2018
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.800 Biomarker group GENOMICS_ENGLAND
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.800 Biomarker group BEFREE A 61-year-old woman with NK-cell deficiency and GATA-2-associated myelodysplastic syndrome, status post-recent allogeneic HSCT (Day +58), presented with 3 days of acute-onset severe back pain, muscle cramps, and increasingly dark urine. 28905389 2017
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.800 GeneticVariation group BEFREE Recent studies are shedding light on the molecular basis of myelodysplasia and how mutations and epimutations can induce and promote this neoplastic process through aberrant transcription factor function (RUNX1, ETV6, TP53), kinase signalling (FLT3, NRAS, KIT, CBL) and epigenetic deregulation (TET2, IDH1/2, DNMT3A, EZH2, ASXL1, SF3B1, U2AF1, SRSF2, ZRSR2). 24903747 2014
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.800 GeneticVariation group BEFREE Various heteroallelic GATA2 gene mutations are associated with a variety of hematological neoplasms, including myelodysplastic syndromes and leukemias. 30710465 2019
Entrez Id: 171023
Gene Symbol: ASXL1
ASXL1
0.800 CausalMutation group CGI
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.800 Biomarker group CTD_human Significantly enriched in high-risk MDS (in comparison to low-risk MDS), TP53, GATA2, KRAS, RUNX1, STAG2, ASXL1, ZRSR2 and TET2 mutations (type 2) had a weaker impact on sAML progression and overall survival than type-1 mutations. 27992414 2017
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.800 GeneticVariation group BEFREE For the first time, we also detected TET2 mutations in BMMΦs from MDS and CMML patients and assayed their effects on LPS responses, including their potential influence on human IL-6 expression. 28826859 2017
Entrez Id: 2624
Gene Symbol: GATA2
GATA2
0.800 Biomarker group BEFREE GATA-2 anomaly and clinical phenotype of a sporadic case of lymphedema, dendritic cell, monocyte, B- and NK-cell (DCML) deficiency, and myelodysplasia. 22430350 2012
Entrez Id: 54790
Gene Symbol: TET2
TET2
0.800 GeneticVariation group BEFREE The analysis suggested TET2 mutations had no significant prognostic value on MDS. 28476038 2017
Entrez Id: 23451
Gene Symbol: SF3B1
SF3B1
0.800 Biomarker group BEFREE U2AF1 is frequently mutated in myeloid hematopoietic malignancies, especially in myelodysplastic syndrome (MDS), and SF3B1 is frequently mutated in both MDS and chronic lymphocytic leukemia (CLL). 22200771 2011