Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 55193
Gene Symbol: PBRM1
PBRM1
0.300 SusceptibilityMutation disease ORPHANET A germline mutation in PBRM1 predisposes to renal cell carcinoma. 25911086 2015
Entrez Id: 4286
Gene Symbol: MITF
MITF
0.300 SusceptibilityMutation disease ORPHANET A SUMOylation-defective MITF germline mutation predisposes to melanoma and renal carcinoma. 22012259 2011
Entrez Id: 6927
Gene Symbol: HNF1A
HNF1A
0.300 Biomarker disease ORPHANET Germline hepatocyte nuclear factor 1alpha and 1beta mutations in renal cell carcinomas. 15649945 2005
Entrez Id: 6927
Gene Symbol: HNF1A
HNF1A
0.300 Biomarker disease ORPHANET Human renal cell carcinogenesis is accompanied by a coordinate loss of the tissue specific transcription factors HNF4 alpha and HNF1 alpha. 8620471 1996
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.050 Biomarker disease BEFREE We selected 14 cases of CCPRCC with a wide spectrum of morphological features diagnosed on morphology and CK7 immunoreactivity and analysed them using a panel of immunohistochemical markers, focusing on 34βE12 and related CKs 1,5,10 and 14 and several molecular analyses such as fluorescence in situ hybridisation (FISH), array comparative genomic hybridisation (aCGH), VHL methylation, VHL and TCEB1 sequencing and multiplex ligation-dependent probe amplification (MLPA). 27923499 2017
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.050 Biomarker disease BEFREE The aim of our project was to investigate specific renal immunohistochemical biomarkers involved in the hypoxia-inducible factor pathway and mutations in the VHL gene to clarify the relationship between ccpRCC and RAT. 25970683 2015
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.050 GeneticVariation disease BEFREE Clear cell papillary renal cell carcinoma (CCPRCC) shares morphologic overlap with clear cell renal cell carcinoma, although it lacks chromosome 3p and VHL gene abnormalities. 23648463 2013
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.050 Biomarker disease BEFREE In conclusion, the coexpression of CA9 and HIF-1α in the absence of VHL gene abnormalities in CCPRCC suggests activation of the HIF pathway by mechanisms independent of VHL gene mutation. 24294381 2013
Entrez Id: 7428
Gene Symbol: VHL
VHL
0.050 GeneticVariation disease BEFREE The co-expression of CA9, HIF-1α, and GLUT-1 in the absence of VHL gene alterations in clear-cell papillary renal cell carcinoma suggests activation of the HIF pathway by non-VHL-dependent mechanisms. 21602815 2011
Entrez Id: 6921
Gene Symbol: ELOC
ELOC
0.040 GeneticVariation disease BEFREE Of the remaining 8 tumors with IHC staining patterns that do not fit either ccRCC or ccpRCC only 3 of these had mutations in the recently described TCEB1 gene with concurrent monosomy of chromosome 8. 30986793 2019
Entrez Id: 6921
Gene Symbol: ELOC
ELOC
0.040 Biomarker disease BEFREE We selected 14 cases of CCPRCC with a wide spectrum of morphological features diagnosed on morphology and CK7 immunoreactivity and analysed them using a panel of immunohistochemical markers, focusing on 34βE12 and related CKs 1,5,10 and 14 and several molecular analyses such as fluorescence in situ hybridisation (FISH), array comparative genomic hybridisation (aCGH), VHL methylation, VHL and TCEB1 sequencing and multiplex ligation-dependent probe amplification (MLPA). 27923499 2017
Entrez Id: 6921
Gene Symbol: ELOC
ELOC
0.040 GeneticVariation disease BEFREE Nine could be reclassified as distinct or emerging entities: translocation renal cell carcinoma (n=3), TCEB1 mutant renal cell carcinoma (n=3), papillary renal cell carcinoma (n=2), and clear cell papillary renal cell carcinoma (n=1). 28731045 2017
Entrez Id: 6921
Gene Symbol: ELOC
ELOC
0.040 GeneticVariation disease BEFREE We analyzed 11 tumors from two distinct cohorts with TCEB1 mutations along with an expanded cohort to assess whether these should be considered an entity distinct from clear cell renal cell carcinoma and clear cell papillary renal cell carcinoma. 25676555 2015
Entrez Id: 3855
Gene Symbol: KRT7
KRT7
0.030 Biomarker disease BEFREE One patient was diagnosed with pT3a cN0M1, Fuhrman grade 3 CCPRCC with renal vein invasion and lung metastasis in 2010 on the basis of the histologic pattern and immunoreactivity for CK7. 30037497 2018
Entrez Id: 768
Gene Symbol: CA9
CA9
0.030 AlteredExpression disease BEFREE Twenty-five cases were morphologically and immunophenotypically consistent with CCPRCC; all of them showed diffuse CK7 expression and cup-like reactivity with CAIX. 28705707 2017
Entrez Id: 3855
Gene Symbol: KRT7
KRT7
0.030 AlteredExpression disease BEFREE Twenty-five cases were morphologically and immunophenotypically consistent with CCPRCC; all of them showed diffuse CK7 expression and cup-like reactivity with CAIX. 28705707 2017
Entrez Id: 768
Gene Symbol: CA9
CA9
0.030 Biomarker disease BEFREE By immunohistochemistry, 7/9 (78%) of the clear cell cases were diffusely positive for both CK7 and CAIX resembling the pattern seen in clear cell papillary renal cell carcinoma. 26574846 2016
Entrez Id: 3855
Gene Symbol: KRT7
KRT7
0.030 Biomarker disease BEFREE Diffuse labeling for CK7 can uncommonly be observed in clear cell renal cell carcinomas confirmed to have chromosome 3p loss, although these do not exhibit the expected staining pattern of clear cell papillary renal cell carcinoma, including positivity for CD10 and AMACR. 26457355 2015
Entrez Id: 768
Gene Symbol: CA9
CA9
0.030 Biomarker disease BEFREE Almost all CCPRCC-like tumors (82%) lacked the characteristic immunoprofile of sporadic CCPRCC (CK7, CAIX, CD10, AMACR), often showing diffuse CD10 labeling (64%), negative or focal CK7 reactivity (55%), or both (18%). 23648463 2013
Entrez Id: 79577
Gene Symbol: CDC73
CDC73
0.020 AlteredExpression disease BEFREE Especially, the parafibromin and hKIM-1 expression exhibited differences in ccpRCC/RAT compared with ccRCC and pRCC. 25970683 2015
Entrez Id: 79577
Gene Symbol: CDC73
CDC73
0.020 Biomarker disease BEFREE Twenty cases of CCPRCC were stained for parafibromin and showed diffuse and strong nuclear positivity for this marker. 23060304 2013
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.010 AlteredExpression disease BEFREE Furthermore, VDR positive expression suggests that ccpRCC originates from the precursor epithelium of distal nephron. 29966830 2018
Entrez Id: 6390
Gene Symbol: SDHB
SDHB
0.010 Biomarker disease BEFREE Renal cell carcinoma with angioleiomyoma-like stroma and clear cell papillary renal cell carcinoma: exploring SDHB protein immunohistochemistry and the relationship to tuberous sclerosis complex. 29180251 2018
Entrez Id: 3861
Gene Symbol: KRT14
KRT14
0.010 AlteredExpression disease BEFREE We concluded that: (1) immunohistochemical expression of CK7 is necessary for diagnostic purposes, but may not be sufficient to identify CCPRCC, while 34βE12, in part due to the presence of CK14 antigen expression, can be extremely useful for the recognition of this tumour; and (2) further molecular analysis of chromosome 3p should be considered to support of CCPRCC diagnosis, when FISH analysis does not evidence the common loss of chromosome 3p. 27923499 2017
Entrez Id: 2625
Gene Symbol: GATA3
GATA3
0.010 Biomarker disease BEFREE Coexpression of GATA3 and CK7 in most CCPRCC provides evidence of their origin from distal nephron. 28705707 2017