Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE Maternal C677T MTHFR polymorphism and environmental factors are associated with cleft lip and palate in a Mexican population. 23787444

2013

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE The common MTHFR C677T and A1298C variants are not associated with the risk of non-syndromic cleft lip/palate in northern Venezuela. 19447376

2009

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE Folate deficiency and the presence of the 677C > T (CT) polymorphism in the methylenetetrahydrofolate reductase (MTHFR) gene have been implicated in the causation of malformations in the fetus (particularly cleft lip and palate and neural tube defects). 17951123

2008

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE Family-based association study of the MTHFR polymorphism C677T in patients with nonsyndromic cleft lip and palate from central Europe. 18452350

2008

dbSNP: rs1217691063
rs1217691063
0.050 GeneticVariation BEFREE Variable contribution of the MTHFR C677T polymorphism to non-syndromic cleft lip and palate risk in China. 16470725

2006

dbSNP: rs401681
rs401681
0.040 GeneticVariation BEFREE <i>Cleft lip and palate transmembrane 1-like</i> (<i>CLPTM1L</i>) gene rs402710 (C > T) and rs401681 (C > T) polymorphisms have been widely studied for their potential relation to cancer risk, but studies have produced conflicting results. 29254260

2017

dbSNP: rs401681
rs401681
0.040 GeneticVariation BEFREE Several recent studies have provided evidence that rs401681 polymorphisms in intronic region of cleft lip and palate trans-membrane 1-like (CLPTM1L) gene sequence are associated with pancreatic cancer (PC) development, but a comprehensive synopsis is not available. 25284078

2015

dbSNP: rs401681
rs401681
0.040 GeneticVariation BEFREE Recently, one genome-wide association study (GWAS), conducted exclusively among women of European ancestry, has discovered that cleft lip and palate transmembrane 1-like telomerase reverse transcriptase (CLPTM1L-TERT) rs401681 polymorphism was significantly associated with pancreatic cancer risk. 24577890

2014

dbSNP: rs401681
rs401681
0.040 GeneticVariation BEFREE Common genetic polymorphisms on chromosome 5p15.33, including rs401681 in cleft lip and palate transmembrane 1-like gene (CLPTM1L), have been implicated in susceptibility to lung cancer through genome-wide association studies (GWAS); however, subsequent replication studies yielded controversial results. 23653681

2013

dbSNP: rs12532
rs12532
0.010 GeneticVariation BEFREE Association between MSX1 rs12532 polymorphism with nonsyndromic unilateral complete cleft lip and palate and tooth agenesis. 31568994

2020

dbSNP: rs17820943
rs17820943
0.010 GeneticVariation BEFREE These results showed that rs17820943 and rs6072081 at 20q12 were associated with NSCL/P, especially with the CLP subtype in a Southern Chinese Han cohort. 31713353

2020

dbSNP: rs4791331
rs4791331
0.010 GeneticVariation BEFREE In the case-control study, the rs4791331-T allele was associated with an increased risk of nonsyndromic orofacial cleft (OR = 1.41, 95% CI = 1.19-1.68), as well as the subgroups cleft lip only (OR = 1.46, 95% CI = 1.14-1.87) and cleft lip and palate (OR = 1.58, 95% CI = 1.27-1.96). 31780810

2020

dbSNP: rs6072081
rs6072081
0.010 GeneticVariation BEFREE These results showed that rs17820943 and rs6072081 at 20q12 were associated with NSCL/P, especially with the CLP subtype in a Southern Chinese Han cohort. 31713353

2020

dbSNP: rs1051266
rs1051266
0.010 GeneticVariation BEFREE Polymorphism of reduced folate carrier 1 (A80G) and non-syndromic cleft lip/palate: A systematic review and meta-analysis. 30579244

2019

dbSNP: rs11696257
rs11696257
0.010 GeneticVariation BEFREE Polymorphic Variants of V-Maf Musculoaponeurotic Fibrosarcoma Oncogene Homolog B (rs13041247 and rs11696257) and Risk of Non-Syndromic Cleft Lip/Palate: Systematic Review and Meta-Analysis. 31387249

2019

dbSNP: rs147680216
rs147680216
0.010 GeneticVariation BEFREE In conclusion we found an rs147680216 G>A mutation that was associated with non-syndromic cleft lip and palate in the Wnt10a gene. 31155400

2019

dbSNP: rs757422353
rs757422353
0.010 GeneticVariation BEFREE Here we report on an extensive pedigree presenting with HDGC, CLP and a CDH1 splice site mutation (c.687 + 1G > A) and review the literature for families with CDH1 mutations, HDGC and CLP. 30306390

2019

dbSNP: rs772267475
rs772267475
0.010 GeneticVariation BEFREE Polymorphism of reduced folate carrier 1 (A80G) and non-syndromic cleft lip/palate: A systematic review and meta-analysis. 30579244

2019

dbSNP: rs876658146
rs876658146
0.010 GeneticVariation BEFREE Here we report on an extensive pedigree presenting with HDGC, CLP and a CDH1 splice site mutation (c.687 + 1G > A) and review the literature for families with CDH1 mutations, HDGC and CLP. 30306390

2019

dbSNP: rs402710
rs402710
0.010 GeneticVariation BEFREE <i>Cleft lip and palate transmembrane 1-like</i> (<i>CLPTM1L</i>) gene rs402710 (C > T) and rs401681 (C > T) polymorphisms have been widely studied for their potential relation to cancer risk, but studies have produced conflicting results. 29254260

2017

dbSNP: rs534391501
rs534391501
0.010 GeneticVariation BEFREE Significantly, we also report the identification of 2 unique missense mutations in the NME proteins in patients with CLP (NME1 R18Q in an IRF6 and GRHL3 mutation-negative patient with van der Woude syndrome and NME2 G71V in a patient with nonsyndromic CLP). 28767310

2017

dbSNP: rs770182236
rs770182236
0.010 GeneticVariation BEFREE Significantly, we also report the identification of 2 unique missense mutations in the NME proteins in patients with CLP (NME1 R18Q in an IRF6 and GRHL3 mutation-negative patient with van der Woude syndrome and NME2 G71V in a patient with nonsyndromic CLP). 28767310

2017

dbSNP: rs1257891978
rs1257891978
0.010 GeneticVariation BEFREE Two novel heterozygous missense mutations in FGFR1, (NM_001174066): c.776G>A (p.G259E) and (NM_001174066): c.358C>T (p.R120C), were identified in a 23-year-old KS male with cleft lip and an 18-year-old KS patient with cleft lip and palate, dental agenesis, and high arched palate, respectively. 26199944

2015

dbSNP: rs1269636220
rs1269636220
0.010 GeneticVariation BEFREE Two novel heterozygous missense mutations in FGFR1, (NM_001174066): c.776G>A (p.G259E) and (NM_001174066): c.358C>T (p.R120C), were identified in a 23-year-old KS male with cleft lip and an 18-year-old KS patient with cleft lip and palate, dental agenesis, and high arched palate, respectively. 26199944

2015

dbSNP: rs1306416169
rs1306416169
0.010 GeneticVariation BEFREE Two novel heterozygous missense mutations in FGFR1, (NM_001174066): c.776G>A (p.G259E) and (NM_001174066): c.358C>T (p.R120C), were identified in a 23-year-old KS male with cleft lip and an 18-year-old KS patient with cleft lip and palate, dental agenesis, and high arched palate, respectively. 26199944

2015