Disease: Secondary malignant neoplasm of lymph node
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs763110
FASLG
0.653 0.560 1 172658358 upstream gene variant C/T snv 0.49 30
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs351855
FGFR4
0.597 0.560 5 177093242 missense variant G/A snv 0.33 0.26 58
rs6762208
SENP2
0.851 0.200 3 185613377 missense variant C/A;T snv 0.36; 1.2E-05 4
rs3741219
MRPL23 ; H19 ; HOTS
0.776 0.280 11 1995389 non coding transcript exon variant A/G snv 0.42 10
rs2839698
MRPL23 ; MIR675 ; H19
0.662 0.520 11 1997623 non coding transcript exon variant G/A snv 0.41 25
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 119
rs438034
CENPF
0.882 0.120 1 214657274 stop gained A/G;T snv 0.61 4
rs1051740
EPHX1
0.592 0.760 1 225831932 missense variant T/C snv 0.32 0.27 56
rs1136410
PARP1
0.559 0.760 1 226367601 missense variant A/G snv 0.21 0.15 70
rs121913529
KRAS
0.492 0.680 12 25245350 missense variant C/A;G;T snv 4.0E-06 144
rs3218038
CCNE1
0.882 0.120 19 29814988 intron variant G/T snv 9.1E-02 4
rs2249825
HMGB1
0.695 0.440 13 30463766 5 prime UTR variant G/A;C;T snv 23
rs1800624
PBX2 ; AGER
0.658 0.480 6 32184610 upstream gene variant A/G;T snv 33
rs187115
CD44
0.695 0.320 11 35154612 intron variant T/C snv 0.37 22
rs1800470
TGFB1
0.515 0.840 19 41353016 missense variant G/A;C snv 0.55; 2.4E-04 107
rs2228468
ACKR2 ; KRBOX1 ; CYP8B1
0.882 0.120 3 42865620 missense variant A/C;T snv 0.43; 8.3E-03 6
rs13181
KLC3 ; ERCC2
0.487 0.760 19 45351661 stop gained T/A;G snv 4.0E-06; 0.32 134
rs11615
ERCC1
0.572 0.640 19 45420395 synonymous variant A/G snv 0.50 0.55 62
rs16949649
NME1 ; NME1-NME2
0.776 0.200 17 51152947 upstream gene variant T/C snv 0.39 12
rs3760468
NME1-NME2 ; NME1
0.882 0.120 17 51153130 upstream gene variant A/T snv 0.39 3
rs2302254
NME1-NME2 ; NME1
0.752 0.240 17 51153539 5 prime UTR variant C/T snv 0.22 15
rs2275913
IL17A
0.514 0.760 6 52186235 upstream gene variant G/A snv 0.28 105
rs3748067
IL17A
0.672 0.320 6 52190541 3 prime UTR variant C/T snv 6.2E-02 21
rs4784227
CASC16
0.807 0.160 16 52565276 intron variant C/T snv 0.20 8