Disease: Secondary malignant neoplasm of lymph node
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs11225395
MMP8
0.776 0.360 11 102725749 intron variant A/C;G snv 11
rs17655
BIVM-ERCC5 ; ERCC5
0.597 0.560 13 102875652 missense variant G/C snv 0.28 0.30 52
rs4938723
MIR34C ; BTG4 ; MIR34B ; LOC728196
0.574 0.680 11 111511840 intron variant T/C snv 0.32 60
rs10754339
VTCN1
0.882 0.120 1 117147650 3 prime UTR variant G/A snv 0.88 0.76 3
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 223
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs1219648
FGFR2
0.716 0.320 10 121586676 intron variant A/G;T snv 17
rs10505477
CASC8 ; PCAT1 ; POU5F1B
0.658 0.400 8 127395198 intron variant A/G snv 0.40 31
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 62
rs766914563
LOC112268426 ; CXCR4
0.732 0.320 2 136115082 synonymous variant C/T snv 7.0E-06 16
rs371074389
LOC112268426 ; CXCR4
0.732 0.320 2 136115226 synonymous variant C/T snv 4.0E-06 4.2E-05 16
rs781172058
CXCR4
0.732 0.320 2 136115340 synonymous variant C/T snv 4.0E-06 16
rs895819
MIR23A ; LOC284454 ; MIR27A ; MIR24-2
0.623 0.560 19 13836478 non coding transcript exon variant T/A;C;G snv 0.34 0.38 46
rs121913377
BRAF
0.354 0.840 7 140753335 missense variant CA/AT;TT mnv 480
rs113488022
BRAF
0.351 0.840 7 140753336 missense variant A/C;G;T snv 4.0E-06 490
rs2294008
PSCA ; JRK
0.672 0.320 8 142680513 5 prime UTR variant C/T snv 0.46 0.45 28
rs2976392
JRK ; PSCA
0.724 0.240 8 142681514 3 prime UTR variant G/A snv 0.46 0.45 15
rs2070744
NOS3
0.608 0.680 7 150992991 intron variant C/T snv 0.70 54
rs1799983
NOS3
0.430 0.880 7 150999023 missense variant T/A;G snv 0.75 246
rs2881766
ESR1
0.882 0.120 6 151797984 intron variant T/G snv 0.35 5
rs1455751791
ESR1
0.882 0.120 6 152011735 synonymous variant C/G snv 4.0E-06 3
rs10053538
HAVCR2
0.807 0.160 5 157110499 intron variant C/A;T snv 7
rs12075
CADM3-AS1 ; ACKR1
0.724 0.240 1 159205564 missense variant G/A snv 0.51 0.66 22
rs4880
SOD2
0.500 0.840 6 159692840 missense variant A/G snv 0.48 0.47 131
rs1205
CRP
0.602 0.680 1 159712443 3 prime UTR variant C/T snv 0.30 46