DisGeNET - a database of gene-disease associations

List of associated variants

Infection caused by Helicobacter pylori, C0850666

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1550117	DNMT3A	0.790	0.320	2	25343038	upstream gene variant	A/G;T	snv			11
rs2075820	NOD1	0.790	0.200	7	30452621	missense variant	C/T	snv	0.27	0.28	10
rs10983755		0.790	0.320	9	117702392	upstream gene variant	G/A	snv		3.2E-02	7
rs2066842	NOD2	0.763	0.200	16	50710713	missense variant	C/A;T	snv	4.0E-06; 0.19		15
rs1179251	IL22 ; LOC105369818	0.763	0.320	12	68251271	intron variant	C/G	snv		0.18	14
rs601338	FUT2 ; LOC105447645	0.742	0.280	19	48703417	stop gained	G/A	snv	0.38	0.45	19
rs1130233	AKT1	0.742	0.480	14	104773557	synonymous variant	C/T	snv	0.30	0.23	13
rs5744174	TLR5	0.742	0.360	1	223111186	missense variant	A/G	snv	0.39	0.34	13
rs3807987	CAV1	0.732	0.280	7	116539780	intron variant	G/A	snv		7.6E-02	17
rs7804372	CAV1	0.716	0.320	7	116554174	intron variant	T/A	snv		0.27	19
rs5744168	TLR5	0.701	0.480	1	223111858	stop gained	G/A	snv	5.3E-02	4.4E-02	18
rs505922	ABO	0.689	0.520	9	133273813	intron variant	C/T	snv			34
rs3748067	IL17A	0.672	0.320	6	52190541	3 prime UTR variant	C/T	snv		6.2E-02	21
rs2297518	NOS2	0.658	0.480	17	27769571	missense variant	G/A	snv	0.18	0.17	30
rs121917864	TLR2	0.645	0.520	4	153704936	missense variant	C/T	snv	8.8E-05	9.8E-05	31
rs3804100	TLR2	0.633	0.720	4	153704257	synonymous variant	T/C	snv	9.0E-02	6.7E-02	36
rs352140	TLR9	0.630	0.680	3	52222681	synonymous variant	C/A;G;T	snv	2.0E-05; 0.49		42
rs3804099	TLR2	0.627	0.680	4	153703504	synonymous variant	T/C	snv	0.40	0.48	40
rs1143627	IL1B	0.605	0.760	2	112836810	5 prime UTR variant	G/A	snv		0.56	47
rs2228145	IL6R	0.602	0.720	1	154454494	missense variant	A/C;T	snv	0.38; 1.2E-05		57
rs763780	IL17F	0.531	0.720	6	52236941	missense variant	T/C	snv	6.7E-02	6.6E-02	87
rs671	ALDH2	0.529	0.840	12	111803962	missense variant	G/A	snv	1.9E-02	5.8E-03	116
rs2275913	IL17A	0.514	0.760	6	52186235	upstream gene variant	G/A	snv		0.28	105
rs1805192	PPARG	0.510	0.840	3	12379739	missense variant	C/G	snv			121
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113