Disease: Malignant neoplasm of stomach
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs11564475
CTNNB1
0.882 0.080 3 41238542 intron variant A/G snv 3.7E-02 3
rs1200055659
S100A16 ; S100A14
0.851 0.080 1 153614902 missense variant G/A snv 7.0E-06 4
rs12108497
PRIMPOL ; CASP3
0.851 0.080 4 184650403 intron variant C/G;T snv 6
rs1760893
TEP1
0.807 0.080 14 20412501 intron variant C/A snv 0.89 6
rs2293035
XRCC1
0.882 0.080 19 43546923 synonymous variant G/A snv 1.6E-04 1.5E-04 3
rs4646421
CYP1A1
0.882 0.080 15 74723851 intron variant G/A;C;T snv 0.21 3
rs621559
CFAP57 ; LOC105378685 ; EBNA1BP2
0.827 0.080 1 43179740 intron variant G/A snv 0.18 5
rs10116253 0.851 0.120 9 117702042 upstream gene variant T/C snv 0.28 4
rs148611340
XRCC1
0.790 0.120 19 43543621 missense variant G/A;C snv 4.0E-06; 1.2E-05 7
rs1870134
XPC ; LSM3
0.827 0.120 3 14178523 missense variant G/C;T snv 4.2E-02; 8.1E-06 5
rs2494752
AKT1
0.790 0.120 14 104797271 upstream gene variant A/G snv 0.85 10
rs1057317
TLR4
0.827 0.160 9 117715764 3 prime UTR variant C/A snv 5
rs12304647
MIR196A2 ; HOXC6
0.807 0.160 12 53991163 intron variant A/C snv 0.26 6
rs6682925
C1orf141 ; IL23R
0.776 0.160 1 67165579 intron variant C/T snv 0.47 11
rs1047972
AURKA
0.716 0.240 20 56386407 missense variant T/C snv 0.85 0.84 19
rs2031920
LOC107984284 ; CYP2E1
0.695 0.240 10 133526341 non coding transcript exon variant C/T snv 3.1E-02 20
rs2303428
MSH2
0.776 0.240 2 47476361 splice region variant T/A;C;G snv 4.0E-06; 0.12 9
rs398652 0.752 0.240 14 56058851 intergenic variant G/A snv 0.24 9
rs1047840
EXO1
0.708 0.280 1 241878999 missense variant G/A snv 0.36 0.40 19
rs1143633
IL1B
0.752 0.280 2 112832890 intron variant C/G;T snv 10
rs3807987
CAV1
0.732 0.280 7 116539780 intron variant G/A snv 7.6E-02 17
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs2853669
TERT
0.649 0.320 5 1295234 upstream gene variant A/G snv 0.25 35
rs3765524
PLCE1
0.724 0.320 10 94298541 missense variant C/T snv 0.27 0.31 15
rs4135385
CTNNB1
0.742 0.320 3 41237949 non coding transcript exon variant A/G snv 0.19 14