Disease: Malignant neoplasm of stomach
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs10116253 0.851 0.120 9 117702042 upstream gene variant T/C snv 0.28 4
rs1045411
HMGB1
0.708 0.360 13 30459095 3 prime UTR variant C/T snv 0.20 16
rs1057317
TLR4
0.827 0.160 9 117715764 3 prime UTR variant C/A snv 5
rs10889677
IL23R
0.627 0.720 1 67259437 3 prime UTR variant C/A snv 0.27 40
rs11134527
MIR218-2 ; SLIT3
0.677 0.400 5 168768351 intron variant G/A snv 0.25 24
rs1131691014
TP53
0.439 0.800 17 7676154 frameshift variant -/C ins 213
rs1143627
IL1B
0.605 0.760 2 112836810 5 prime UTR variant G/A snv 0.56 45
rs1143633
IL1B
0.752 0.280 2 112832890 intron variant C/G;T snv 10
rs11536889
TLR4
0.658 0.560 9 117715853 3 prime UTR variant G/C snv 0.11 27
rs11564475
CTNNB1
0.882 0.080 3 41238542 intron variant A/G snv 3.7E-02 3
rs1200055659
S100A16 ; S100A14
0.851 0.080 1 153614902 missense variant G/A snv 7.0E-06 4
rs12108497
PRIMPOL ; CASP3
0.851 0.080 4 184650403 intron variant C/G;T snv 6
rs12304647
MIR196A2 ; HOXC6
0.807 0.160 12 53991163 intron variant A/C snv 0.26 6
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs1760893
TEP1
0.807 0.080 14 20412501 intron variant C/A snv 0.89 6
rs1800625
AGER ; PBX2
0.641 0.680 6 32184665 upstream gene variant A/G snv 0.15 35
rs1800734
EPM2AIP1 ; MLH1
0.653 0.400 3 36993455 5 prime UTR variant G/A snv 0.22 30
rs1800796
IL6-AS1 ; STEAP1B ; IL6
0.555 0.760 7 22726627 non coding transcript exon variant G/C snv 9.9E-02 74
rs1800871
IL19 ; IL10
0.508 0.800 1 206773289 5 prime UTR variant A/G snv 0.69 107
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 118
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113
rs1927911
TLR4
0.658 0.640 9 117707776 intron variant A/G snv 0.62 28
rs2031920
LOC107984284 ; CYP2E1
0.695 0.240 10 133526341 non coding transcript exon variant C/T snv 3.1E-02 20
rs20417
PACERR ; PTGS2
0.576 0.600 1 186681189 non coding transcript exon variant C/G;T snv 57
rs2070744
NOS3
0.608 0.680 7 150992991 intron variant C/T snv 0.70 53