HSPG2, heparan sulfate proteoglycan 2, 3339

N. diseases: 405; N. variants: 11
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs137853248
rs137853248
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C4551479
Disease:
Schwartz-Jampel Syndrome, Type 1
0.800 GeneticVariation UNIPROT Perlecan, the major proteoglycan of basement membranes, is altered in patients with Schwartz-Jampel syndrome (chondrodystrophic myotonia). 11101850 2000
dbSNP: rs137853248
rs137853248
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C4551479
Disease:
Schwartz-Jampel Syndrome, Type 1
T 0.800 CausalMutation CLINVAR
dbSNP: rs2229482
rs2229482
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0005890
Disease:
Body Height
T 0.700 GeneticVariation GWASCAT Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits. 28552196 2017
dbSNP: rs2445130
rs2445130
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0002395
Disease:
Alzheimer's Disease
A 0.700 GeneticVariation GWASCAT Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3. 26830138 2016
dbSNP: rs745452577
rs745452577
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0036346
Disease:
Schizophrenia, Childhood
A 0.700 GeneticVariation CLINVAR De novo variants in sporadic cases of childhood onset schizophrenia. 26508570 2016
dbSNP: rs142149919
rs142149919
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0006142
Disease:
Malignant neoplasm of breast
0.700 GeneticVariation GWASDB Genome-wide testing of putative functional exonic variants in relationship with breast and prostate cancer risk in a multiethnic population. 23555315 2013
dbSNP: rs886039909
rs886039909
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C1849039
Disease:
Metaphyseal widening
T 0.700 GeneticVariation CLINVAR
dbSNP: rs886039909
rs886039909
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0239234
Disease:
Low set ears
T 0.700 GeneticVariation CLINVAR
dbSNP: rs886039909
rs886039909
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0005744
Disease:
Blepharophimosis
T 0.700 GeneticVariation CLINVAR
dbSNP: rs886039909
rs886039909
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0016202
Disease:
Flatfoot
T 0.700 GeneticVariation CLINVAR
dbSNP: rs886039909
rs886039909
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C4551479
Disease:
Schwartz-Jampel Syndrome, Type 1
T 0.700 GeneticVariation CLINVAR
dbSNP: rs886039909
rs886039909
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0424448
Disease:
Mask-like facies
T 0.700 GeneticVariation CLINVAR
dbSNP: rs2445142
rs2445142
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0686347
Disease:
Tardive Dyskinesia
0.030 GeneticVariation BEFREE To add to the evidence for this gene in TD, we conducted a meta-analysis specific to the relationship of <i>HSPG2</i> rs2445142 with TD occurrence, while also adding our unpublished genotype data. 30283332 2018
dbSNP: rs2445142
rs2445142
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C3714760
Disease:
Drug-induced tardive dyskinesia
0.030 GeneticVariation BEFREE To add to the evidence for this gene in TD, we conducted a meta-analysis specific to the relationship of <i>HSPG2</i> rs2445142 with TD occurrence, while also adding our unpublished genotype data. 30283332 2018
dbSNP: rs2445142
rs2445142
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0686347
Disease:
Tardive Dyskinesia
0.030 GeneticVariation BEFREE Applying logistic regression and controlling for relevant clinical risk factors, we were able to replicate the association of HSPG2 SNP rs2445142 with TD in a prospective study sample of 179 Americans of European origin by performing a secondary analysis of the CATIE (Clinical Antipsychotic Trials of Intervention Effectiveness) genome-wide association study data set, and using a perfect proxy surrogate marker (rs878949; P = 0.039). 21808285 2012
dbSNP: rs2445142
rs2445142
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C3714760
Disease:
Drug-induced tardive dyskinesia
0.030 GeneticVariation BEFREE Applying logistic regression and controlling for relevant clinical risk factors, we were able to replicate the association of HSPG2 SNP rs2445142 with TD in a prospective study sample of 179 Americans of European origin by performing a secondary analysis of the CATIE (Clinical Antipsychotic Trials of Intervention Effectiveness) genome-wide association study data set, and using a perfect proxy surrogate marker (rs878949; P = 0.039). 21808285 2012
dbSNP: rs2445142
rs2445142
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0686347
Disease:
Tardive Dyskinesia
0.030 GeneticVariation BEFREE By a genome-wide association screening of TD in 50 Japanese schizophrenia patients with treatment-resistant TD and 50 Japanese schizophrenia patients without TD (non-TD group) and subsequent confirmation in independent samples of 36 treatment-resistant TD and 136 non-TD subjects, we identified association of a single nucleotide polymorphism, rs2445142, (allelic p=2 x 10(-5)) in the HSPG2 (heparan sulfate proteoglycan 2, perlecan) gene with TD. 20072119 2010
dbSNP: rs2445142
rs2445142
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C3714760
Disease:
Drug-induced tardive dyskinesia
0.030 GeneticVariation BEFREE By a genome-wide association screening of TD in 50 Japanese schizophrenia patients with treatment-resistant TD and 50 Japanese schizophrenia patients without TD (non-TD group) and subsequent confirmation in independent samples of 36 treatment-resistant TD and 136 non-TD subjects, we identified association of a single nucleotide polymorphism, rs2445142, (allelic p=2 x 10(-5)) in the HSPG2 (heparan sulfate proteoglycan 2, perlecan) gene with TD. 20072119 2010
dbSNP: rs137853248
rs137853248
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0036391
Disease:
Schwartz-Jampel Syndrome
0.020 GeneticVariation BEFREE We used homologous recombination to generate a knock-in mouse strain with one missense substitution, corresponding to a human familial SJS mutation (p.C1532Y), in the perlecan gene. 18647752 2008
dbSNP: rs137853248
rs137853248
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0036391
Disease:
Schwartz-Jampel Syndrome
0.020 GeneticVariation BEFREE In contrast, C1532Y mice, harboring only the mutation associated with SJS, displayed a mild phenotype, inconsistent with SJS. 17213231 2007
dbSNP: rs1327754652
rs1327754652
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0036391
Disease:
Schwartz-Jampel Syndrome
0.010 GeneticVariation BEFREE Introduction of the mutation (R3452Q) associated with the human skeletal disorder Schwartz-Jampel syndrome limited HSPG2 IV-3-induced clustering. 30203597 2018
dbSNP: rs1312344491
rs1312344491
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C4551479
Disease:
Schwartz-Jampel Syndrome, Type 1
0.010 GeneticVariation BEFREE We report a novel homozygous intronic 5' splice site mutation in this gene (c.4740 + 5G>A) in a child with clinical features of Schwartz-Jampel syndrome type 1. 27521129 2016
dbSNP: rs3767140
rs3767140
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0011849
Disease:
Diabetes Mellitus
0.010 GeneticVariation BEFREE Therefore, the HSPG2-rs3767140 might be a protective for the diabetes mellitus due to its ameliorating effect on the dyslipidemic phenotype. 27545212 2016
dbSNP: rs3767140
rs3767140
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0242339
Disease:
Dyslipidemias
0.010 GeneticVariation BEFREE Can rs3767140 SNP of the perlecan (HSPG2) gene affect the diabetes mellitus through the dyslipidemia? 27545212 2016
dbSNP: rs3767140
rs3767140
Entrez Id: 3339
Gene Symbol: HSPG2
HSPG2
CUI: C0011860
Disease:
Diabetes Mellitus, Non-Insulin-Dependent
0.010 GeneticVariation BEFREE We investigated that the HSPG2-rs3767140 promoted to the dyslipidemic phenotype in the type 2 diabetes mellitus (T2DM) patients. 27545212 2016