LIPA, lipase A, lysosomal acid type, 3988

N. diseases: 130; N. variants: 50
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2250781
rs2250781
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010068
Disease:
Coronary heart disease
0.700 GeneticVariation GWASDB Large-scale gene-centric analysis identifies novel variants for coronary artery disease. 21966275 2011
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010054
Disease:
Coronary Arteriosclerosis
0.020 GeneticVariation BEFREE Our findings show that the coronary artery disease-associated coding variant rs1051338 causes reduced lysosomal LAL protein and activity because of increased LAL degradation, providing a plausible causal mechanism of increased coronary artery disease risk. 28279971 2017
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010068
Disease:
Coronary heart disease
0.020 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338</span>, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1956346
Disease:
Coronary Artery Disease
0.020 GeneticVariation BEFREE Our findings show that the coronary artery disease-associated coding variant rs1051338 causes reduced lysosomal LAL protein and activity because of increased LAL degradation, providing a plausible causal mechanism of increased coronary artery disease risk. 28279971 2017
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010068
Disease:
Coronary heart disease
0.020 GeneticVariation BEFREE Our findings show that the coronary artery disease-associated coding variant rs1051338 causes reduced lysosomal LAL protein and activity because of increased LAL degradation, providing a plausible causal mechanism of increased coronary artery disease risk. 28279971 2017
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010054
Disease:
Coronary Arteriosclerosis
0.020 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338</span>, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1956346
Disease:
Coronary Artery Disease
0.020 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338</span>, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1843013
Disease:
Alzheimer disease, familial, type 3
0.010 GeneticVariation BEFREE We found that LIPA exon 2 polymorphism (rs1051338) influenced plasma 24S-hydroxycholesterol/cholesterol ratios in AD patients where carriers of the C/C allele presented with higher ratios than heterozygote carriers of the LIPA allele. 16730122 2006
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0494463
Disease:
Alzheimer Disease, Late Onset
0.010 GeneticVariation BEFREE We investigated two LIPA polymorphisms (rs1051338 and rs2297472) for their putative effect on the risk of LOAD in a homogenous sample of German origin. 16730122 2006
dbSNP: rs1051338
rs1051338
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0002395
Disease:
Alzheimer's Disease
0.010 GeneticVariation BEFREE We found that LIPA exon 2 polymorphism (rs1051338) influenced plasma 24S-hydroxycholesterol/cholesterol ratios in AD patients where carriers of the C/C allele presented with higher ratios than heterozygote carriers of the LIPA allele. 16730122 2006
dbSNP: rs1051339
rs1051339
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010068
Disease:
Coronary heart disease
0.010 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051339
rs1051339
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1956346
Disease:
Coronary Artery Disease
0.010 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs1051339
rs1051339
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0010054
Disease:
Coronary Arteriosclerosis
0.010 GeneticVariation BEFREE Further, we characterized a second common exonic coding variant (rs1051339), which is predicted to alter LIPA signal peptide cleavage similarly to rs1051338, yet is not linked to intronic variants. rs1051339 also does not impact LIPA function in vitro and confers no coronary artery disease risk. 31645127 2019
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C2936797
Disease:
Acid cholesteryl ester hydrolase deficiency, type 2
0.010 GeneticVariation BEFREE Meta-analysis of existing genetic studies estimated the prevalence of LAL-D as 1 per 160,000 (95% CI 1 per 65,025-761,652) using the allele frequency of c.894G>A in LIPA. 30315827 2019
dbSNP: rs116928232
rs116928232
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0020443
Disease:
Hypercholesterolemia
0.010 GeneticVariation BEFREE We used exome sequencing to assess all protein-coding regions of the genome in 3 family members and identified a homozygous exon 8 splice junction mutation (c.894G>A, also known as E8SJM) in LIPA that segregated with the diagnosis of hypercholesterolemia. 24072694 2013
dbSNP: rs13500
rs13500
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0002395
Disease:
Alzheimer's Disease
0.010 GeneticVariation BEFREE CH25H rs13500 polymorphism is associated with an AD risk in the Turkish population and CH25H might have a role in the pathogenesis of AD together with, and independently from APOE. 30684189 2019
dbSNP: rs1412444
rs1412444
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0524620
Disease:
Metabolic Syndrome X
0.010 GeneticVariation BEFREE Additionally, we found the interactions of APOA5 rs662799, BUD13 rs11216129, BUD13 rs623908, CETP rs820299, LIPA rs1412444, alcohol consumption, smoking status, or physical activity on MetS and its individual components. 27827461 2016
dbSNP: rs1412444
rs1412444
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0027051
Disease:
Myocardial Infarction
0.010 GeneticVariation BEFREE After age, sex, and BMI adjustment, we observed the SNPs rs12190287, rs12413409, rs1412444, rs1746048 and rs4977574, were significantly associated with MI in additive models and rs12190287, rs12413409, rs4977574 were significantly associated with phenotypes of MI at the same time. 24475106 2014
dbSNP: rs1423914418
rs1423914418
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C2936797
Disease:
Acid cholesteryl ester hydrolase deficiency, type 2
0.010 GeneticVariation BEFREE The dosage of serum lysosomal acid lipase was undetectable and we found the presence of a rare homozygous mutation in the gene associated with the lysosomal acid lipase deficiency, (allele c.386A > G homozygous p.H129R). 31113597 2020
dbSNP: rs2246833
rs2246833
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C1956346
Disease:
Coronary Artery Disease
0.010 GeneticVariation BEFREE These results indicate that the rs1412444 and rs2246833 of the LIPA gene are shared susceptibility polymorphisms for CAD among different ethnicities. 24069331 2013
dbSNP: rs2246833
rs2246833
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0027051
Disease:
Myocardial Infarction
0.010 GeneticVariation BEFREE The subjects with rs2246833 TT genotype in MI patients had higher LDL-C levels than the subjects with rs2246833 CC/CT genotypes (P = 0.006). 30003933 2018
dbSNP: rs2297472
rs2297472
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0494463
Disease:
Alzheimer Disease, Late Onset
0.010 GeneticVariation BEFREE We investigated two LIPA polymorphisms (rs1051338 and rs2297472) for their putative effect on the risk of LOAD in a homogenous sample of German origin. 16730122 2006
dbSNP: rs303218
rs303218
Entrez Id: 3434;3988
Gene Symbol: IFIT1;LIPA
IFIT1;LIPA
CUI: C0151517
Disease:
Complete atrioventricular block
0.010 GeneticVariation BEFREE <i>IFIT1</i> involves in the regulation of IFNα treatment for CHB and its polymorphism rs303218 can predict the end point virological response. 27956805 2016
dbSNP: rs304496
rs304496
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0021390
Disease:
Inflammatory Bowel Diseases
0.010 GeneticVariation BEFREE The results showed that IL-10 rs304496 was associated with pediatric IBD (<i>P</i> = 0.022), but no association was found for two other IL-10 SNPs, rs1800872 and rs2034498, or for SNPs in genes <i>IL10RA</i>, <i>IL10RB</i>, <i>STAT3</i>, and <i>HO1</i>. 28785144 2017
dbSNP: rs770407719
rs770407719
Entrez Id: 3988
Gene Symbol: LIPA
LIPA
CUI: C0019214
Disease:
Hepatosplenomegaly
0.010 GeneticVariation BEFREE Since the residual LAL activity is higher and the clinical phenotype based on plasma lipid values and severity of hepatosplenomegaly is milder in this case than in a previously studied case who was homozygous for the E8SJM allele, we conclude that the L336P variant appears to be associated with a phenotypically mild form of CESD. 7773732 1995