LTA, lymphotoxin alpha, 4049

N. diseases: 353; N. variants: 26
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2239704
rs2239704
Entrez Id: 4049;100287329
Gene Symbol: LTA;LOC100287329
LTA;LOC100287329
CUI: C0302592
Disease:
Cervix carcinoma
A 0.710 GeneticVariation GWASCAT Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study. 28806749 2017
dbSNP: rs2239704
rs2239704
Entrez Id: 4049;100287329
Gene Symbol: LTA;LOC100287329
LTA;LOC100287329
CUI: C0302592
Disease:
Cervix carcinoma
0.710 GeneticVariation BEFREE The rare allele (A) of SNP rs2239704 in the 5' UTR of the LTA gene was significantly associated with increased risks of cervical cancer (OR=1.31, 95% CI: 1.15-1.50; adjusted p-value: 0.013) and vulvar cancer (OR=1.51, 95% CI: 1.30-1.75; adjusted p-value: 1.9 × 10(-5) ). 23824834 2014
dbSNP: rs1799964
rs1799964
Entrez Id: 4049;7124;100287329
Gene Symbol: LTA;TNF;LOC100287329
LTA;TNF;LOC100287329
CUI: C0302592
Disease:
Cervix carcinoma
0.010 GeneticVariation BEFREE The frequency of A allele in rs1799964 was also higher for cervi</span>cal cancer group (38.3%) than control group (16.4%; odds ratio = 1.43, 95% confidence interval = 1.07-1.91, P < .05). 29940817 2018
dbSNP: rs1799724
rs1799724
Entrez Id: 4049;7124
Gene Symbol: LTA;TNF
LTA;TNF
CUI: C0302592
Disease:
Cervix carcinoma
0.010 GeneticVariation BEFREE CXCL12 rs266085 and TNF-α rs1799724 polymorphisms and susceptibility to cervical cancer in a Chinese population. 26191295 2015
dbSNP: rs1041981
rs1041981
Entrez Id: 4049;100287329
Gene Symbol: LTA;LOC100287329
LTA;LOC100287329
CUI: C0302592
Disease:
Cervix carcinoma
0.010 GeneticVariation BEFREE A significant association of CxCa with various polymorphisms was observed: rs1800797 in the IL-6 gene (odds ratio [OR] = 0.88, 95% confidence intervals [CI]: 0.79-0.99); rs1041981 in the LTA gene (OR = 0.87, 95% CI: 0.78-0.98), and rs9344 in the CCND1 gene (OR = 1.14, 95% CI: 1.02-1.27), for those individuals carrying the rare allele. 19585495 2009