Source: ALL
Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE The presence of PTPN22 1858C→T polymorphism with HLA SE and autoantibodies increases risk of RA development and erosive disease. 27324632 2016
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE The functional PTPN22 C1858T polymorphism was associated with an increased risk for RA in our study population. 26951256 2016
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE The resulting Ptpn22(R619W) mice showed increased insulin autoantibodies and earlier onset and higher penetrance of T1D. 27207523 2016
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE Our data not only establish a molecular link between PTPN22 and PAD-4, but also suggest that the C1858T SNP increases the risk of RA by enhancing protein citrullination and spontaneous formation of NETs. 26019128 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE The most significant association was with two T1D SNPs, rs12150079 (ZPBP2/ORMDL3/GSDMB region) (enterovirus frequency: AA 7.3%, AG 8.7%, GG 9.7%, RR = 0.86, overall p = 1.87E-02) and rs229541 (C1QTNF6/SSTR3/RAC2) (enterovirus frequency: CC 7.8%, CT 9.7%, TT 9.4%, RR = 1.13, overall p = 3.6E-02), followed by TLR8 (rs2407992) (p = 3.8E-02), TLR3 (1914926) (p = 4.9E-02), and two other T1D SNPs (IFIH1 rs3747517, p = 4.9E-02 and PTPN22, rs2476601, p = 5.3E-02). 26485223 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE These SNPs were also significantly associated with T1D in particular: rs2476601 (HR 2.42 [95% CI 1.70-3.44]). 25422107 2015
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation GWASCAT High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci. 24532676 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE We found that the TT +TC genotype and the T allele of C1858T were more frequent in T1DM patients (19.40 and 10.0%, respectively) than in healthy subjects (7.51 and 4.0%, respectively), and the difference was significant (both P < 0.001). 25729936 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation GWASCAT Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers. 25751624 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation GWASCAT Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes. 25936594 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE The PTPN22 C1858T is not relevant in susceptibility to T1D in the Azeri population of Northwest Iran. 25243643 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE Polymorphisms in the TNF-α(rs1800629), CTLA-4 (rs231775), and PTPN22 (rs2476601) genes have been previous associated with T1D; however, there is no consensus regarding their role in T1D and scarce literature focusing on AIDT and/or CD. 26782543 2015
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE The autoimmune-associated genetic variant PTPN22 R620W enhances neutrophil activation and function in patients with rheumatoid arthritis and healthy individuals. 24665115 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE One hundred and one children with type 1 diabetes and 160 healthy controls from the same region were studied for HLA-DQB1, HLA-DQA1, and HLA-DRB1 (DR4 subtypes) alleles; for INS and protein tyrosine phosphatase, non-receptor type 22 gene polymorphisms (rs689 and rs2476601); and for diabetes-associated autoantibodies. 25256132 2015
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE Our meta-analysis demonstrated that PTPN22 rs2476601 and STAT4 rs7574865 polymorphisms confers susceptibility to RA in total subjects and in major ethnic groups. 25963842 2015
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE Considering that previous studies in other populations reported the T allele as the risk allele at this locus, the present study concluded that rs2476601 play no role in susceptibility to RA and other autoimmune diseases in Iranian population. 26547712 2015
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE PTPN22 rs2476601 is associated with JIA and numerous other autoimmune diseases, and has been reported to show female-specific association with type 1 diabetes. 26291515 2015
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation BEFREE A single nucleotide polymorphism of PTPN22, 1858C>T (rs2476601), disrupts an interaction motif in the protein, and is the most important non-HLA genetic risk factor for rheumatoid arthritis and the second most important for juvenile idiopathic arthritis. 25003765 2014
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation GWASCAT Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study. 24449572 2014
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE Preserved proinsulin production in homozygous protein tyrosine phosphatase nonreceptor type 22 C1858T variant type 1 diabetes: a possible explanation for absence of overt ketoacidosis despite omission of exogenous insulin. 23337153 2014
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation GWASCAT Genetics of rheumatoid arthritis contributes to biology and drug discovery. 24390342 2014
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation GWASDB Genetics of rheumatoid arthritis contributes to biology and drug discovery. 24390342 2014
Rheumatoid Arthritis
CUI: C0003873
Disease: Rheumatoid Arthritis
1.000 GeneticVariation GWASDB Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study. 24449572 2014
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE There was no association between the single nucleotide polymorphism 1858C>T and Type 1 diabetes in our studied cohort. 24117662 2014
Diabetes Mellitus, Insulin-Dependent
1.000 GeneticVariation BEFREE In contrast to previous reports, we found no evidence for an alteration of the B cell compartment in healthy individuals homozygous for the non-synonymous PTPN22 Trp(620) T1D risk allele (rs2476601; Arg(620) Trp). 24773525 2014