Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE The observations of renal failure in one male and nephrolithiasis in two females represent important new findings in this Japanese variant of Dent's disease that is associated with CLCN5 mutations. 10916075 2000
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE Dent's disease (X-linked nephrolithiasis) is associated with mutations in the CLCN5 chloride channel gene, and low molecular weight (LMW) proteinuria was universally observed in affected males. 10620204 2000
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.600 Biomarker disease BEFREE In addition, OPN is associated with renal stones, but whether it acts as a promoter or inhibitor of stone formation is controversial. 11703581 2001
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE ClC-5 is a chloride channel whose gene mutations have been reported to be associated with X-linked nephrolithiasis (XRN), X-linked recessive hypophosphatemic rickets (XLRH), Dent disease, and idiopathic low-molecular-weight proteinuria (ILMWP) in Japanese children. 11261675 2001
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 Biomarker disease BEFREE The gene responsible for the XLN forms of kidney stones was cloned and characterized as a chloride channel called ClC-5. 11262581 2001
Entrez Id: 189
Gene Symbol: AGXT
AGXT
0.050 GeneticVariation disease BEFREE The new technology could also be helpful in the search for healthy carriers of AGXT mutations amongst family members and their partners, and for screening of AGXT polymorphisms in patients with nephrolithiasis and healthy populations. 11699734 2001
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE The intact hypocalciuric response to a thiazide diuretic indicates that inactivation of the ClC-5 chloride channel does not impair calcium transport in the distal convoluted tubule and indicates that thiazides should be useful in reducing the risk of kidney stone recurrence in patients with Dent's disease. 12444212 2002
Entrez Id: 1178
Gene Symbol: CLC
CLC
0.020 Biomarker disease BEFREE X-linked nephrolithiasis and engineered deficiencies in some other CLC Cl(-) channels are thought to represent defects of organellar acidification. 11826292 2002
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE Mutations in the gene coding for the chloride channel ClC-5 cause Dent's disease, a disease associated with proteinuria and renal stones. 12746443 2003
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Association between vitamin D receptor gene polymorphisms and tubular citrate handling in calcium nephrolithiasis. 12542560 2003
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE VDR genotype determination may provide a tool to identify individuals who are at a risk for calcium nephrolithiasis. 12814692 2003
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE In order to assess the eventual role of VDR gene start codon polymorphisms in stone production, we analyzed the genotype-phenotype association in a group of patients with calcium kidney stones. 12018632 2003
Entrez Id: 6569
Gene Symbol: SLC34A1
SLC34A1
0.080 AlteredExpression disease BEFREE The onset of renal stones correlated developmentally with the absence of Npt2 expression and the expression of the genes responsible for the renal production (1alpha-hydroxylase) and catabolism (24-hydroxylase) of 1,25-dihydroxyvitamin D. In summary, we show that Npt2 gene ablation is associated with renal calcification and suggest that mutations in the NPT2 gene may contribute to nephrocalcinosis in a subset of patients with familial hypercalciuria. 12674325 2003
Entrez Id: 7498
Gene Symbol: XDH
XDH
0.020 GeneticVariation disease BEFREE This raises the point that individuals with a heterozygous XDH mutation may also present with renal stones. 14551354 2003
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 GeneticVariation disease BEFREE Dent's disease (X-linked nephrolithiasis) is a proximal tubulopathy that has been consistently associated with inactivating mutations in the CLCN5 gene encoding the ClC-5 chloride channel expressed in tubular epithelial cells. 15086899 2004
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Recurrent calcium oxalate stone formers with IHc and the bT VDR haplotype have more aggressive kidney stone diseases as indicated by a higher familial incidence and lower mean age at onset. 15213319 2004
Entrez Id: 1184
Gene Symbol: CLCN5
CLCN5
0.100 Biomarker disease BEFREE In the course of CLCN5 SSCP analysis in patients with hypercalciuric nephrolithiasis, we detected a novel mutation at intron 2 of the CLCN5 gene, a T-to-G substitution, located 17 bp upstream of the AG acceptor site. 14673707 2004
Entrez Id: 5741
Gene Symbol: PTH
PTH
0.100 AlteredExpression disease BEFREE However, PTH levels were suppressed, and urinary calcium excretion was elevated, which led to nephrolithiasis in both children. 15240651 2004
Entrez Id: 3250
Gene Symbol: HPR
HPR
0.010 Biomarker disease BEFREE The primary hyperoxalurias type 1 (PH1) and type 2 (PH2) are autosomal recessive calcium oxalate kidney stone diseases caused by deficiencies of the metabolic enzymes alanine:glyoxylate aminotransferase (AGT) and glyoxylate/hydroxypyruvate reductase (GR/HPR), respectively. 14987413 2004
Entrez Id: 6696
Gene Symbol: SPP1
SPP1
0.600 Biomarker disease LHGDN Apatite plaque particles in inner medulla of kidneys of calcium oxalate stone formers: osteopontin localization. 15954903 2005
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.100 GeneticVariation disease BEFREE Formation of kidney stones is still not understood but is hypothesized to be associated with the vitamin D receptor gene (VDR). 15735395 2005
Entrez Id: 1178
Gene Symbol: CLC
CLC
0.020 GeneticVariation disease BEFREE Human mutations in CLC channels are known to cause diseases as diverse as myotonia (muscle stiffness), Bartter syndrome (renal salt loss) with or without deafness, Dent's disease (proteinuria and kidney stones), osteopetrosis and neurodegeneration, and possibly epilepsy. 15709978 2005
Entrez Id: 799
Gene Symbol: CALCR
CALCR
0.020 GeneticVariation disease BEFREE Association of vitamin-D and calcitonin receptor gene polymorphism in paediatric nephrolithiasis. 15856322 2005
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.010 Biomarker disease BEFREE In the present study, we investigated the role of oxalate, a major constituent of calcium oxalate kidney stone disease, in the production of IL-6 in normal human HK-2 kidney cells. 16014026 2005
Entrez Id: 960
Gene Symbol: CD44
CD44
0.200 Biomarker disease RGD Modeling of hyperoxaluric calcium oxalate nephrolithiasis: experimental induction of hyperoxaluria by hydroxy-L-proline. 16850024 2006