Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5781
Gene Symbol: PTPN11
PTPN11
0.300 Biomarker disease CTD_human Whole-genome sequencing of a single proband together with linkage analysis identifies a Mendelian disease gene. 20577567 2010
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.120 AlteredExpression disease BEFREE The expression patterns of IHH (Indian hedgehog) and FGFR3 (Fibroblast Growth Factor Receptor 3) were similar with transcripts expressed throughout osteochondromas. 16476576 2006
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.120 Biomarker disease BEFREE The expression of PTHrP, PTHrP-receptor, Bcl-2, FGF2, FGFR1, FGFR3, and p21 is investigated by immunohistochemistry in osteochondromas (n = 24) and peripheral (n = 29) and central (n = 20) chondrosarcomas. 11140704 2000
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.120 Biomarker disease HPO
Entrez Id: 5573
Gene Symbol: PRKAR1A
PRKAR1A
0.110 AlteredExpression disease BEFREE CAR mRNA was expressed at high levels in osteosarcoma, Ewing's sarcoma, neurofibroma, and schwannoma; at intermediate levels in exostosis, giant cell tumor, liposarcoma, synovial sarcoma, malignant peripheral nerve sheath tumor, and hemangioma; and at low levels in alveolar soft part sarcoma and desmoid. 15173092 2004
Entrez Id: 5573
Gene Symbol: PRKAR1A
PRKAR1A
0.110 Biomarker disease HPO
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 Biomarker disease BEFREE Osteochondromas were more frequent in EXT1 as compared to EXT2 patients. 30806661 2019
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 Biomarker disease BEFREE The more significant positive rate of EXT1 in condylar osteochondroma implied differential biological characteristic as compared to condylar hyperplasia. 31842965 2019
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE Osteochondroma development requires a somatic "second hit" that would complement the germline EXT mutation to further decrease HS production and/levels at perichondrial sites of osteochondroma induction. 29277722 2018
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE In this work, osteochondroma (OC), peripheral chondrosarcoma, and healthy cartilaginous human samples were processed following a procedure previously set up to structurally characterize and compare HS from pathologic and physiologic conditions, and to examine the phenotypic differences that arise in the presence of either exostosin 1 or 2 (<i>EXT1</i> or <i>EXT2</i>) mutations. 30544937 2018
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE The establishment of mouse mutants demonstrated that a clonal, homozygous loss of Ext1 in a wild type background leads to the development of osteochondromas. 29545125 2018
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 Biomarker disease BEFREE Systemic administration with LDN-193189 effectively inhibited osteochondroma growth in conditional Ext1-mutant mice. 28445472 2017
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE This report shows that germline mutations of EXT2 can result, not only in the development of multiple benign osteochondromas, but also in the development of isolated malignant cartilaginous tumors including central tumors, and that the presence of germline EXT2 mutation should be considered in patients suspected to have an inherited predisposition to chondrosarcoma, even in the absence of MO. 27636706 2017
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 Biomarker disease BEFREE We demonstrate that progenitor cells in the perichondrium, including those in the groove of Ranvier, highly express HS and that Ext1 ablation targeted to the perichondrium results in the development of osteochondromas. 28768899 2017
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 Biomarker disease BEFREE Hereditary multiple exostoses patients carry heterozygous mutations in the heparan sulfate (HS)-synthesizing enzymes EXT1 or EXT2, but studies suggest that EXT haploinsufficiency and ensuing partial HS deficiency are insufficient for exostosis formation. 25863260 2015
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE Direct sequencing from DNA extracted from different sites of two tumor samples (a small rapidly growing osteochondroma and a giant peripheral secondary chondrosarcoma, each located at different chondrocostal junctions) revealed the loss of the germline EXT2 mutation. 25744876 2015
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 Biomarker disease BEFREE Hereditary multiple exostoses patients carry heterozygous mutations in the heparan sulfate (HS)-synthesizing enzymes EXT1 or EXT2, but studies suggest that EXT haploinsufficiency and ensuing partial HS deficiency are insufficient for exostosis formation. 25863260 2015
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE Here, employing a composite pipeline method derived from various inference-based programs, we have characterized 26 deletion CNVs [including three novel pathogenic CNVs involving an autosomal gene (EXT2) causing hereditary osteochondromas and an X-linked gene (CLCN5) causing Dent disease, as well as 23 CNVs previously identified by inference from a cohort of Canadian autism spectrum disorder families] to the single-base-pair level of accuracy from whole-genome sequencing data. 25792359 2015
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE We report using a targeted-tiling-resolution oligo-array-CGH (array comparative genomic hybridization) that homozygous deletions of EXT1 or EXT2 are much less frequently detected (2/17, 12%) in sporadic secondary peripheral chondrosarcomas than expected based on the assumption that they originate in sporadic osteochondromas, in which homozygous inactivation of EXT1 is found in ~80% of our cases. 21804604 2012
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE Here, we described that homozygous mutations in EXT1/EXT2, which are causative for osteochondroma formation, are likely to affect terminal chondrocyte differentiation and vascularisation in the osteocartilaginous interface. 22116208 2012
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 Biomarker disease BEFREE Our data therefore point to a model of oncogenesis in which the osteochondroma creates a niche in which wild-type cells with functional EXT are predisposed to acquire other mutations giving rise to secondary peripheral chondrosarcoma, indicating that EXT-independent mechanisms are involved in the pathogenesis of secondary peripheral chondrosarcoma. 21804604 2012
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 Biomarker disease BEFREE Previously, we have used zebrafish which harbour mutations in ext2 as a model for MO and shown that ext2⁻/⁻ fish have skeletal defects that resemble those seen in osteochondromas. 22253766 2012
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 Biomarker disease BEFREE EXT2-positive multiple hereditary osteochondromas with some features suggestive of metachondromatosis. 21892728 2012
Entrez Id: 2131
Gene Symbol: EXT1
EXT1
0.100 GeneticVariation disease BEFREE The diagnostic criteria are at least two osteochondromas of the juxta-epiphyseal region of long bones with in the majority of cases a positive family history and/or mutation in one of the EXT genes. 21499719 2011
Entrez Id: 2132
Gene Symbol: EXT2
EXT2
0.100 GeneticVariation disease BEFREE We describe the genetic examination of three secondary peripheral chondrosarcomas that had arisen synchronously from osteochondromas in a patient with MO by chromosome banding, high resolution chromosomal comparative genomic hybridization, and mutation analysis of the EXT1 and EXT2 genes. 22285020 2011