Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5199
Gene Symbol: CFP
CFP
0.030 GeneticVariation disease BEFREE In patients with positive ELISpot in pleural fluid (n = 16), the PPV for TB was 85.7%, which increased to 91.7% for the ESAT-6 panel and 92.3% for the CFP-10 panel after the introduction of a cut-off >1.0 for the ratio between the pleural fluid and blood interferon-gamma responses. 28024452 2017
Entrez Id: 5199
Gene Symbol: CFP
CFP
0.030 Biomarker disease BEFREE In addition, we compared the levels of A antigen (ESAT-6) and B antigen (CFP-10) in active TB. 28345545 2017
Entrez Id: 5199
Gene Symbol: CFP
CFP
0.030 GeneticVariation disease BEFREE In order to identify immunodominant antigens of Mycobacterium tuberculosis that may be used in the serodiagnosis of active tuberculosis (TB), we designed an M. tuberculosis fusion protein consisting of CFP-10 (10-kDa culture filtrate protein), ESAT-6 (6-kDa early secreted antigenic target), and the extracellular domain fragment of PPE68 (PPE68'). 22357648 2012
Entrez Id: 1493
Gene Symbol: CTLA4
CTLA4
0.010 Biomarker disease BEFREE Surprisingly, BTLA expression, both alone and in combination with CTLA-4 and PD-1, was markedly downregulated on Mtb-specific CD4 T cells in HIV-infected individuals with active TB. 31497018 2019
Entrez Id: 3627
Gene Symbol: CXCL10
CXCL10
0.020 Biomarker disease BEFREE This study shows that IP-10 is a potential biomarker for differentiating active tuberculosis from latent tuberculosis. 31388072 2019
Entrez Id: 3627
Gene Symbol: CXCL10
CXCL10
0.020 Biomarker disease BEFREE Therefore, direct analysis of the serum components of the IL-18/IL-37 signalling complex and IP-10 may be applicable in designing novel diagnostic tests for ATB. 31821340 2019
Entrez Id: 3576
Gene Symbol: CXCL8
CXCL8
0.010 Biomarker disease BEFREE In healthy household contacts (HHC), all the tested antigens induced significantly higher levels of IFN-γ and Interlukin-8 (IL-8) compared with those in PTB. 26546406 2015
Entrez Id: 120227
Gene Symbol: CYP2R1
CYP2R1
0.010 GeneticVariation disease BEFREE Analyses were conducted to test for main effects of vitamin D status and SNPs in VDR (rs731236, rs2228570 and rs1544410), DBP (rs7041 and rs4588) and CYP2R1 (rs2060793, rs10500804 and rs10766197) on susceptibility to TB, and to investigate whether these SNPs modify the association between vitamin D status and disease susceptibility. 27160686 2016
Entrez Id: 140596
Gene Symbol: DEFB104A
DEFB104A
0.010 AlteredExpression disease BEFREE IL-32 induced the vitamin D-dependent antimicrobial peptides cathelicidin and DEFB4 and to generate antimicrobial activity in vitro, dependent on the presence of adequate 25-hydroxyvitamin D. In addition, the IL-15-induced defense response macrophage gene network was integrated with ranked pairwise comparisons of gene expression from five different clinical data sets of latent compared with active tuberculosis or healthy controls and a coexpression network derived from gene expression in patients with tuberculosis undergoing chemotherapy. 25143364 2014
Entrez Id: 503618
Gene Symbol: DEFB104B
DEFB104B
0.010 AlteredExpression disease BEFREE IL-32 induced the vitamin D-dependent antimicrobial peptides cathelicidin and DEFB4 and to generate antimicrobial activity in vitro, dependent on the presence of adequate 25-hydroxyvitamin D. In addition, the IL-15-induced defense response macrophage gene network was integrated with ranked pairwise comparisons of gene expression from five different clinical data sets of latent compared with active tuberculosis or healthy controls and a coexpression network derived from gene expression in patients with tuberculosis undergoing chemotherapy. 25143364 2014
Entrez Id: 1673
Gene Symbol: DEFB4A
DEFB4A
0.010 AlteredExpression disease BEFREE IL-32 induced the vitamin D-dependent antimicrobial peptides cathelicidin and DEFB4 and to generate antimicrobial activity in vitro, dependent on the presence of adequate 25-hydroxyvitamin D. In addition, the IL-15-induced defense response macrophage gene network was integrated with ranked pairwise comparisons of gene expression from five different clinical data sets of latent compared with active tuberculosis or healthy controls and a coexpression network derived from gene expression in patients with tuberculosis undergoing chemotherapy. 25143364 2014
Entrez Id: 100289462
Gene Symbol: DEFB4B
DEFB4B
0.010 AlteredExpression disease BEFREE IL-32 induced the vitamin D-dependent antimicrobial peptides cathelicidin and DEFB4 and to generate antimicrobial activity in vitro, dependent on the presence of adequate 25-hydroxyvitamin D. In addition, the IL-15-induced defense response macrophage gene network was integrated with ranked pairwise comparisons of gene expression from five different clinical data sets of latent compared with active tuberculosis or healthy controls and a coexpression network derived from gene expression in patients with tuberculosis undergoing chemotherapy. 25143364 2014
Entrez Id: 1841
Gene Symbol: DTYMK
DTYMK
0.010 Biomarker disease BEFREE We recently showed that assays of M.tb thymidylate kinase (TMKmt) antigen and host specific IgG can differentiate ATB from LTBI and or no TB (NTB, or healthy controls). 29548281 2018
Entrez Id: 1845
Gene Symbol: DUSP3
DUSP3
0.010 Biomarker disease BEFREE Of these, three datasets (N=1023) were used to discover a set of three genes (GBP5, DUSP3, and KLF2) that are highly diagnostic for active tuberculosis. 26907218 2016
Entrez Id: 10148
Gene Symbol: EBI3
EBI3
0.010 Biomarker disease BEFREE In the current study, we found that the mRNA expressions of the both subunits (p35 and Ebi3) of IL-35 by circulating B cells were increased in ATB patients. 31170628 2019
Entrez Id: 2096
Gene Symbol: ESAT
ESAT
0.060 Biomarker disease BEFREE The purpose of this study was to investigate the factors affecting quantified spot-forming cells (SFCs) to early secreted antigenic target 6 kDa (ESAT-6) or culture filtrate protein 10 kDa (CFP-10) in patients with active tuberculosis. 31357953 2019
Entrez Id: 2096
Gene Symbol: ESAT
ESAT
0.060 Biomarker disease BEFREE Thus, ESAT-6 is a potential candidate for use in detection of early, as well as active, tuberculosis and for control of the disease. 10992526 2000
Entrez Id: 2096
Gene Symbol: ESAT
ESAT
0.060 AlteredExpression disease BEFREE In addition, we compared the levels of A antigen (ESAT-6) and B antigen (CFP-10) in active TB. 28345545 2017
Entrez Id: 2096
Gene Symbol: ESAT
ESAT
0.060 GeneticVariation disease BEFREE In patients with positive ELISpot in pleural fluid (n = 16), the PPV for TB was 85.7%, which increased to 91.7% for the ESAT-6 panel and 92.3% for the CFP-10 panel after the introduction of a cut-off >1.0 for the ratio between the pleural fluid and blood interferon-gamma responses. 28024452 2017
Entrez Id: 2096
Gene Symbol: ESAT
ESAT
0.060 Biomarker disease BEFREE Thus, our study indicates that the fusion protein CFP-10-ESAT-6-PPE68' may be useful as an immunodominant antigen for the serodiagnosis of active TB. 22357648 2012
Entrez Id: 2096
Gene Symbol: ESAT
ESAT
0.060 AlteredExpression disease BEFREE Compared with healthy controls, the levels of ESAT-6 and Ag85B were higher in patients with active tuberculosis (p<0.001). 28416440 2017
Entrez Id: 2137
Gene Symbol: EXTL3
EXTL3
0.010 Biomarker disease BEFREE HBsAg positivity was 12.2%, HCVAb 3.3%, HIVAb 1.6%, TPPA+RPR positivity in the 0.7%; 10.2% had a positive Mantoux test; 5.6% had Chest X-rays positive for signs of infection and 6 patients had an active tuberculosis. 30377049 2019
Entrez Id: 2309
Gene Symbol: FOXO3
FOXO3
0.010 GeneticVariation disease BEFREE FOXO3 rs12212067: T > G Association with Active Tuberculosis in Han Chinese Population. 26223437 2016
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.010 AlteredExpression disease BEFREE Immunosuppression during active tuberculosis is characterized by decreased interferon- gamma production and CD25 expression with elevated forkhead box P3, transforming growth factor- beta , and interleukin-4 mRNA levels. 17299718 2007
Entrez Id: 2669
Gene Symbol: GEM
GEM
0.010 GeneticVariation disease BEFREE This cross-sectional study examined the KIR gene frequencies, profiles, and haplotypes of individuals with active tuberculosis, latent tuberculosis infection, compared to TB and HIV negative healthy controls. 26077983 2015