Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 79718
Gene Symbol: TBL1XR1
TBL1XR1
0.310 CausalMutation disease CGI
Entrez Id: 5243
Gene Symbol: ABCB1
ABCB1
0.030 GeneticVariation disease BEFREE The MDR1 gene messenger ribonucleic acid (mRNA) was detected in two tumors using the Chinese hamster probe (one sphenoid wing meningioma and one metastatic prostate tumor) and in one CNS lymphoma using the human probe. 1682428 1991
Entrez Id: 23158
Gene Symbol: TBC1D9
TBC1D9
0.020 GeneticVariation disease BEFREE The MDR1 gene messenger ribonucleic acid (mRNA) was detected in two tumors using the Chinese hamster probe (one sphenoid wing meningioma and one metastatic prostate tumor) and in one CNS lymphoma using the human probe. 1682428 1991
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.070 Biomarker disease BEFREE BCL-6(+)/LMP-1(-)/BCL-2(-) PCNSL occur both in the presence and in the absence of HIV infection and consistently display a large noncleaved cell morphology. 9680371 1998
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.060 Biomarker disease BEFREE BCL-6(+)/LMP-1(-)/BCL-2(-) PCNSL occur both in the presence and in the absence of HIV infection and consistently display a large noncleaved cell morphology. 9680371 1998
Entrez Id: 9260
Gene Symbol: PDLIM7
PDLIM7
0.020 Biomarker disease BEFREE BCL-6(+)/LMP-1(-)/BCL-2(-) PCNSL occur both in the presence and in the absence of HIV infection and consistently display a large noncleaved cell morphology. 9680371 1998
Entrez Id: 4436
Gene Symbol: MSH2
MSH2
0.010 AlteredExpression disease BEFREE All but one PCNSL expressed hMSH2, which among mature B cells selectively stains GC B cells. 9680371 1998
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.060 Biomarker disease BEFREE Translocation of IgH and bcl-2, the apoptotic "survival" signal and proto-oncogene, could contribute to the pathogenesis of PCNSL. 9754175 1998
Entrez Id: 3492
Gene Symbol: IGH
IGH
0.050 Biomarker disease BEFREE Rearrangement of the IgH gene can serve as a molecular marker for PCNSL. 9754175 1998
Entrez Id: 7301
Gene Symbol: TYRO3
TYRO3
0.010 GeneticVariation disease BEFREE We report here a case of primary central nervous system lymphoma in which chromosomal rearrangements and marker chromosomes not identified by a routine cytogenetic technique were clarified by SKY. 9844601 1998
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.060 AlteredExpression disease BEFREE In contrast, PCNSLs in immunosuppressed patients were shown to express high levels of BCL-2, BCL-X, and BAX in more than 80% of tumor cells in 7, 10, and 11 cases, respectively. 10697273 2000
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.030 AlteredExpression disease BEFREE Primary lymphoma of peripheral nerve is a rare neoplasm, usually of large B-cell type, has a variable prognosis, and appears to have less consistent loss of p16 expression than primary central nervous system lymphoma. 10976700 2000
Entrez Id: 115482713
Gene Symbol: H3P10
H3P10
0.010 AlteredExpression disease BEFREE Primary lymphoma of peripheral nerve is a rare neoplasm, usually of large B-cell type, has a variable prognosis, and appears to have less consistent loss of p16 expression than primary central nervous system lymphoma. 10976700 2000
Entrez Id: 3492
Gene Symbol: IGH
IGH
0.050 Biomarker disease BEFREE To elucidate the histogenesis of PCNSL, we analyzed the source of the cells from its variable region (VH) sequences using the polymerase chain reaction (PCR) method to amplify the immunoglobulin heavy chain (IgH) gene of DNA extracted from paraffin sections. 11378551 2001
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.030 AlteredExpression disease BEFREE These results indicate that inactivation of p14(ARF) and p16(INK4a) by either homozygous deletion or promoter hypermethylation represents an important molecular pathogenesis in PCNSLs. 11522621 2001
Entrez Id: 1026
Gene Symbol: CDKN1A
CDKN1A
0.010 Biomarker disease BEFREE Hypermethylation of RB1, p21(Waf1), and p27(Kip1) appears to be of minor significance, these genes being independently methylated in PCNSLs. 11522621 2001
Entrez Id: 1027
Gene Symbol: CDKN1B
CDKN1B
0.010 Biomarker disease BEFREE Hypermethylation of RB1, p21(Waf1), and p27(Kip1) appears to be of minor significance, these genes being independently methylated in PCNSLs. 11522621 2001
Entrez Id: 10519
Gene Symbol: CIB1
CIB1
0.010 Biomarker disease BEFREE Hypermethylation of RB1, p21(Waf1), and p27(Kip1) appears to be of minor significance, these genes being independently methylated in PCNSLs. 11522621 2001
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.060 Biomarker disease BEFREE The present study is the first to suggest that the INK4a/ARF gene homozygous deletions and overexpression of the bcl-2 protein may be correlated with each other and together serve as important predictors for the prognosis of patients with PCNSL. 11804283 2001
Entrez Id: 1029
Gene Symbol: CDKN2A
CDKN2A
0.030 AlteredExpression disease BEFREE The present study is the first to suggest that the INK4a/ARF gene homozygous deletions and overexpression of the bcl-2 protein may be correlated with each other and together serve as important predictors for the prognosis of patients with PCNSL. 11804283 2001
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.070 AlteredExpression disease BEFREE Breakpoints in the BCL6 locus were observed in 3 of the 13 cases, and nuclear Bcl-6 protein expression was detected in 6 of 9 PCNSLs, including those with genomic alterations of the encoding locus. 12387458 2002
Entrez Id: 50802
Gene Symbol: IGK
IGK
0.010 GeneticVariation disease BEFREE Signal constellations indicating breakpoints within the IGH and IGK locus were detected in 5 and 1 PCNSLs, respectively. 12387458 2002
Entrez Id: 10563
Gene Symbol: CXCL13
CXCL13
0.040 Biomarker disease BEFREE Whereas BCA-1 was not detected in normal human brain, all 24 brain biopsy specimens containing PCNSL were positive for BCA-1. 12393412 2003
Entrez Id: 5796
Gene Symbol: PTPRK
PTPRK
0.010 Biomarker disease BEFREE Our results suggest that a 140-kb deletion located at 6q22-23 may contain the putative tumor suppressor, PTPRK, that appears to be relevant to the pathogenesis and prognosis of PCNSLs. 12591717 2003
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.070 AlteredExpression disease BEFREE BCL-6 expression predicts improved survival in patients with primary central nervous system lymphoma. 12631608 2003