Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4311
Gene Symbol: MME
MME
0.020 Biomarker disease BEFREE We combined these approaches in a series of eight PCNSL cases, analyzing the chromosomal abnormalities using comparative genomic hybridization (CGH), testing for Epstein Barr virus (EBV) involvement by in situ hybridization for EBER, assessing expression of p53, Bcl-2, Bcl-6 and CD10 by means of immunohistochemistry, and screening for mutations of the TP53 gene by DGGE. 12802586 2003
Entrez Id: 4609
Gene Symbol: MYC
MYC
0.030 Biomarker disease BEFREE In summary, our data demonstrate aberrant somatic hypermutations at high frequency in the PIM1, PAX5, RhoH/TTF, and c-MYC genes in most PCNSLs. 14592832 2004
Entrez Id: 355
Gene Symbol: FAS
FAS
0.010 GeneticVariation disease BEFREE We have addressed whether aberrant ongoing hypermutation can be detected in the proto-oncogenes PIM1, c-MYC, RhoH/TTF, PAX5, and the tumor-suppressor gene CD95 in primary central nervous system lymphomas (PCNSLs) derived from immunocompetent HIV-negative patients. 14592832 2004
Entrez Id: 4548
Gene Symbol: MTR
MTR
0.010 GeneticVariation disease BEFREE The methionine synthase polymorphism D919G alters susceptibility to primary central nervous system lymphoma. 15138479 2004
Entrez Id: 4580
Gene Symbol: MTX1
MTX1
0.100 GeneticVariation disease BEFREE Of 37 PCNSL treated with HD-MTX-based chemotherapy, methylation occurred in nine cases (24%, M-PCNSL), while 28 cases (76%, U-PCNSL) were negative. 15327516 2004
Entrez Id: 6573
Gene Symbol: SLC19A1
SLC19A1
0.020 PosttranslationalModification disease BEFREE RFC promoter methylation occurred in 12 of 40 (30%) PCNSL and in four of 50 (8%) DLBCL (P = 0.01). 15327516 2004
Entrez Id: 5981
Gene Symbol: RFC1
RFC1
0.010 PosttranslationalModification disease BEFREE RFC promoter methylation occurred in 12 of 40 (30%) PCNSL and in four of 50 (8%) DLBCL (P = 0.01). 15327516 2004
Entrez Id: 10673
Gene Symbol: TNFSF13B
TNFSF13B
0.030 AlteredExpression disease BEFREE BAFF is produced by astrocytes and up-regulated in multiple sclerosis lesions and primary central nervous system lymphoma. 15642740 2005
Entrez Id: 4580
Gene Symbol: MTX1
MTX1
0.100 Biomarker disease BEFREE Although HD-MTX therapy is supposed to be effective for patients with MDR-1-negative PCNSL, MTX alone should be avoided in the choice of the anticancer drug for the treatment of MDR-1-positive PCNSL. 15700834 2004
Entrez Id: 5243
Gene Symbol: ABCB1
ABCB1
0.030 Biomarker disease BEFREE Although HD-MTX therapy is supposed to be effective for patients with MDR-1-negative PCNSL, MTX alone should be avoided in the choice of the anticancer drug for the treatment of MDR-1-positive PCNSL. 15700834 2004
Entrez Id: 23158
Gene Symbol: TBC1D9
TBC1D9
0.020 Biomarker disease BEFREE Although HD-MTX therapy is supposed to be effective for patients with MDR-1-negative PCNSL, MTX alone should be avoided in the choice of the anticancer drug for the treatment of MDR-1-positive PCNSL. 15700834 2004
Entrez Id: 10892
Gene Symbol: MALT1
MALT1
0.010 GeneticVariation disease BEFREE Trisomy 3, but not MALT1 or IgH translocation, is a common genetic abnormality that may contribute to the pathogenesis of this CNS lymphoma. 16009945 2005
Entrez Id: 3565
Gene Symbol: IL4
IL4
0.020 AlteredExpression disease BEFREE We also identify high expression in CNS lymphomas of several IL-4-induced genes, including X-box binding protein 1 (XBP-1), a regulator of the UPR. 16418334 2006
Entrez Id: 6778
Gene Symbol: STAT6
STAT6
0.010 AlteredExpression disease BEFREE High expression of activated STAT6 in tumors was associated with short survival in an independent set of patients with primary CNS lymphoma who were treated with high-dose intravenous methotrexate therapy. 16418334 2006
Entrez Id: 3492
Gene Symbol: IGH
IGH
0.050 GeneticVariation disease BEFREE CSF analysis of IgH gene rearrangement in CNS lymphoma: relationship to the disease course. 16678210 2006
Entrez Id: 51750
Gene Symbol: RTEL1
RTEL1
0.010 Biomarker disease BEFREE Zp-V3 was significantly associated with AIDS-PCNSL (P<0.001) and with systemic AIDS-NHL (P=0.007), in particular with AIDS-related immunoblastic lymphoma (P<0.001). 16784778 2007
Entrez Id: 8739
Gene Symbol: HRK
HRK
0.010 Biomarker disease BEFREE Our findings suggest that transcriptional repression of HRK is caused by promoter hypermethylation in PCNSL, and that the loss of HRK associated with the methylation profile of other genes is a potential step in the modulation of cellular death by apoptosis during PCNSL tumorigenesis. 16809940 2006
Entrez Id: 604
Gene Symbol: BCL6
BCL6
0.070 GeneticVariation disease BEFREE We studied 41 PCNSLs by fluorescence in situ hybridization for breakpoints affecting the BCL6 locus in chromosomal band 3q27. 16896311 2006
Entrez Id: 3492
Gene Symbol: IGH
IGH
0.050 GeneticVariation disease BEFREE Bone marrow and peripheral-blood specimens of 24 PCNSL patients were examined using polymerase chain reaction (PCR) for analysis of clonally rearranged immunoglobulin heavy-chain (IgH) genes. 16966685 2006
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.010 Biomarker disease BEFREE It is suggested that the high frequency of COX-2 and VEGF coexpression in PCNSLs may be associated with tumorigenesis of PCNSLs and could possibly lead to a future therapeutic trial of PCNSLs with selective COX-2 inhibitor therapy. 17671709 2007
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.010 Biomarker disease BEFREE It is suggested that the high frequency of COX-2 and VEGF coexpression in PCNSLs may be associated with tumorigenesis of PCNSLs and could possibly lead to a future therapeutic trial of PCNSLs with selective COX-2 inhibitor therapy. 17671709 2007
Entrez Id: 107075310
Gene Symbol: MTCO2P12
MTCO2P12
0.010 Biomarker disease BEFREE It is suggested that the high frequency of COX-2 and VEGF coexpression in PCNSLs may be associated with tumorigenesis of PCNSLs and could possibly lead to a future therapeutic trial of PCNSLs with selective COX-2 inhibitor therapy. 17671709 2007
Entrez Id: 4513
Gene Symbol: COX2
COX2
0.010 Biomarker disease BEFREE It is suggested that the high frequency of COX-2 and VEGF coexpression in PCNSLs may be associated with tumorigenesis of PCNSLs and could possibly lead to a future therapeutic trial of PCNSLs with selective COX-2 inhibitor therapy. 17671709 2007
Entrez Id: 462
Gene Symbol: SERPINC1
SERPINC1
0.010 GeneticVariation disease BEFREE ATIII RNA transcripts were identified within CNS lymphomas, and ATIII protein was localized selectively to tumor neovasculature. 18056677 2008
Entrez Id: 3662
Gene Symbol: IRF4
IRF4
0.030 AlteredExpression disease BEFREE The association between the expression levels of LMP-1 and IRF-4 is statistically significant (P = 0.011) in these CNS lymphomas. 18417578 2008