Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 133482
Gene Symbol: SLCO6A1
SLCO6A1
0.010 Biomarker disease BEFREE Specific and high level antibody responses were obtained for four recombinant proteins, of which antigen GST-822 was recognized by 60% of EP-TB and 42% of TBH and antigen MBP-506 was recognized by 45% of EP-TB and 61% of TBH. 11325550 2001
Entrez Id: 4155
Gene Symbol: MBP
MBP
0.010 Biomarker disease BEFREE Specific and high level antibody responses were obtained for four recombinant proteins, of which antigen GST-822 was recognized by 60% of EP-TB and 42% of TBH and antigen MBP-506 was recognized by 45% of EP-TB and 61% of TBH. 11325550 2001
Entrez Id: 373156
Gene Symbol: GSTK1
GSTK1
0.010 Biomarker disease BEFREE Specific and high level antibody responses were obtained for four recombinant proteins, of which antigen GST-822 was recognized by 60% of EP-TB and 42% of TBH and antigen MBP-506 was recognized by 45% of EP-TB and 61% of TBH. 11325550 2001
Entrez Id: 6556
Gene Symbol: SLC11A1
SLC11A1
0.010 GeneticVariation disease BEFREE The Nramp1 alleles were not associated with increased risk for the development of cavities seen on chest radiographs, or with extrapulmonary tuberculosis. 12195379 2002
Entrez Id: 100188784
Gene Symbol: AFA1
AFA1
0.010 GeneticVariation disease BEFREE Application of nested polymerase chain reaction (nPCR) using MPB 64 gene primers to detect Mycobacterium tuberculosis DNA in clinical specimens from extrapulmonary tuberculosis patients. 16177475 2005
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.010 AlteredExpression disease BEFREE Finally, FoxP3 expression was increased 2.3-fold in patients with extrapulmonary TB compared with patients with purely pulmonary TB (p = 0.01) and was amplified 2.6-fold at disease sites relative to blood (p = 0.043). 16339919 2006
Entrez Id: 1521
Gene Symbol: CTSW
CTSW
0.010 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 939
Gene Symbol: CD27
CD27
0.010 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 5027
Gene Symbol: P2RX7
P2RX7
0.040 GeneticVariation disease BEFREE A polymorphism in the P2X7 gene increases susceptibility to extrapulmonary tuberculosis. 17095747 2007
Entrez Id: 4153
Gene Symbol: MBL2
MBL2
0.010 AlteredExpression disease BEFREE These results indicate that low levels of MBL and AB genotype may be involved in the protection against tuberculosis, especially extrapulmonary tuberculosis in children. 18612667 2008
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 Biomarker disease BEFREE Usefulness of the whole-blood interferon-gamma release assay for diagnosis of extrapulmonary tuberculosis. 19070449 2009
Entrez Id: 6347
Gene Symbol: CCL2
CCL2
0.020 GeneticVariation disease BEFREE CCR2 V64I (G/A), monocyte chemoattractant protein-1 (MCP-1) -2518 A/G, stromal cell derived factor-1alpha; (SDF-1alpha) 3'UTR G/A and DC-SIGN gene polymorphisms were studied by polymerase chain reaction based methods in HIV-1 infected patients without TB (n=151), with pulmonary TB (PTB) (n=81) and extrapulmonary TB (n=31), 155 PTB patients without HIV and 206 healthy controls. 19942750 2009
Entrez Id: 30835
Gene Symbol: CD209
CD209
0.010 GeneticVariation disease BEFREE CCR2 V64I (G/A), monocyte chemoattractant protein-1 (MCP-1) -2518 A/G, stromal cell derived factor-1alpha; (SDF-1alpha) 3'UTR G/A and DC-SIGN gene polymorphisms were studied by polymerase chain reaction based methods in HIV-1 infected patients without TB (n=151), with pulmonary TB (PTB) (n=81) and extrapulmonary TB (n=31), 155 PTB patients without HIV and 206 healthy controls. 19942750 2009
Entrez Id: 7183
Gene Symbol: TRC-GCA24-1
TRC-GCA24-1
0.010 Biomarker disease BEFREE These results demonstrated that detection of M. tuberculosis complex in clinical specimens by TRC-2 with ready-to-use reagents was an efficient and rapid method for the diagnosis of pulmonary and extrapulmonary TB. 19741080 2009
Entrez Id: 729230
Gene Symbol: CCR2
CCR2
0.010 GeneticVariation disease BEFREE CCR2 V64I (G/A), monocyte chemoattractant protein-1 (MCP-1) -2518 A/G, stromal cell derived factor-1alpha; (SDF-1alpha) 3'UTR G/A and DC-SIGN gene polymorphisms were studied by polymerase chain reaction based methods in HIV-1 infected patients without TB (n=151), with pulmonary TB (PTB) (n=81) and extrapulmonary TB (n=31), 155 PTB patients without HIV and 206 healthy controls. 19942750 2009
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 Biomarker disease BEFREE The average plasma concentration of IFN-gamma among patients with tuberculosis was significantly lower than in the control group, and were lower in the EPTB group than in the group with PTB, suggesting a relationship of low plasma levels of this cytokine with active tuberculosis and the progression to more serious forms of the disease. 20353805 2010
Entrez Id: 5027
Gene Symbol: P2RX7
P2RX7
0.040 GeneticVariation disease BEFREE Polymorphism in the p2x7 gene increases susceptibility to extrapulmonary tuberculosis in Turkish children. 20661107 2010
Entrez Id: 7097
Gene Symbol: TLR2
TLR2
0.030 GeneticVariation disease BEFREE In this pilot study among extrapulmonary tuberculosis patients with well-characterized immune defects, genetic variants in IL-1beta, VDR Fok1, and TLR2 were associated with an increased risk of extrapulmonary disease. 20196868 2010
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.020 Biomarker disease BEFREE Polymorphisms in IL-1beta, vitamin D receptor Fok1, and Toll-like receptor 2 are associated with extrapulmonary tuberculosis. 20196868 2010
Entrez Id: 3586
Gene Symbol: IL10
IL10
0.020 GeneticVariation disease BEFREE In addition, IL10(-1082)-IL10(-592) haplotypes showed differences between pleural, miliary and all forms of extrapulmonary TB when compared with pulmonary TB (P<0.05). 20188863 2010
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 GeneticVariation disease BEFREE However, combined TNF-α/IL-10 low producer genotypes appeared to have protect effect to pTB (OR = 0.44, 95% CI, 0.21-0.89; Pc = 0.04) and epTB (OR = 0.26, 95% CI, 0.1-0.62; Pc = 0.0028). 21609779 2011
Entrez Id: 5027
Gene Symbol: P2RX7
P2RX7
0.040 GeneticVariation disease BEFREE Collectively, our results suggest that the P2X7 1513A/C loss-of-function polymorphism may contribute to susceptibility to epTB in Tunisian populations. 21635566 2011
Entrez Id: 7097
Gene Symbol: TLR2
TLR2
0.030 GeneticVariation disease BEFREE The aim of this study is to examine the occurrence of the Arg753Gln polymorphism of the Toll-like receptor 2 (TLR2) gene in Turkish children with pulmonary and/or extrapulmonary tuberculosis (TB) disease compared with that in healthy children with latent TB infection (LTBI) and to assess the risk of progression from LTBI to active TB disease in children. 21320563 2011
Entrez Id: 3586
Gene Symbol: IL10
IL10
0.020 GeneticVariation disease BEFREE However, combined TNF-α/IL-10 low producer genotypes appeared to have protect effect to pTB (OR = 0.44, 95% CI, 0.21-0.89; Pc = 0.04) and epTB (OR = 0.26, 95% CI, 0.1-0.62; Pc = 0.0028). 21609779 2011