Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 AlteredExpression disease BEFREE <b>Results:</b> While all of the studied cytokine secretions varied after <i>in vitro</i> infection, higher levels of TNF-α and VEGF secretions were observed <i>in vitro</i> in the infected macrophages respectively in the PTB and EPTB infecting clinical isolates. 29515555 2018
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.010 AlteredExpression disease BEFREE <b>Results:</b> While all of the studied cytokine secretions varied after <i>in vitro</i> infection, higher levels of TNF-α and VEGF secretions were observed <i>in vitro</i> in the infected macrophages respectively in the PTB and EPTB infecting clinical isolates. 29515555 2018
Entrez Id: 7097
Gene Symbol: TLR2
TLR2
0.030 GeneticVariation disease BEFREE (3) Stratified by sample type, TLR2 Arg753Gln polymorphism is associated with increased PTB risk, but not with EPTB. 30733958 2019
Entrez Id: 729230
Gene Symbol: CCR2
CCR2
0.010 GeneticVariation disease BEFREE CCR2 V64I (G/A), monocyte chemoattractant protein-1 (MCP-1) -2518 A/G, stromal cell derived factor-1alpha; (SDF-1alpha) 3'UTR G/A and DC-SIGN gene polymorphisms were studied by polymerase chain reaction based methods in HIV-1 infected patients without TB (n=151), with pulmonary TB (PTB) (n=81) and extrapulmonary TB (n=31), 155 PTB patients without HIV and 206 healthy controls. 19942750 2009
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 Biomarker disease BEFREE Interferon-gamma response to the treatment of active pulmonary and extra-pulmonary tuberculosis. 28911359 2017
Entrez Id: 100
Gene Symbol: ADA
ADA
0.010 Biomarker disease BEFREE Adenosine deaminase (ADA) is used to diagnose several settings of extra-pulmonary tuberculosis but it is limited in TBM especially among HIV-infected patients. 29705393 2018
Entrez Id: 5027
Gene Symbol: P2RX7
P2RX7
0.040 GeneticVariation disease BEFREE A polymorphism in the P2X7 gene increases susceptibility to extrapulmonary tuberculosis. 17095747 2007
Entrez Id: 3459
Gene Symbol: IFNGR1
IFNGR1
0.010 GeneticVariation disease BEFREE Allele T frequencies of IFNγR1 -56 C/T promoter region in patients with pulmonary TB (PTB) or extrapulmonary TB (EPTB) were significantly greater than allele C. The -56 TT motif of IFNγR1 is associated with both forms of TB (p<0.05). 27941164 2016
Entrez Id: 100188784
Gene Symbol: AFA1
AFA1
0.010 GeneticVariation disease BEFREE Application of nested polymerase chain reaction (nPCR) using MPB 64 gene primers to detect Mycobacterium tuberculosis DNA in clinical specimens from extrapulmonary tuberculosis patients. 16177475 2005
Entrez Id: 57817
Gene Symbol: HAMP
HAMP
0.010 GeneticVariation disease BEFREE Association of Single-Nucleotide Polymorphism in the Hepcidin Promoter Gene with Susceptibility to Extrapulmonary Tuberculosis. 28530443 2017
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 Biomarker disease BEFREE At 24 weeks post ATT commencement, markers underlying the observed increases in MDP scores were IL-27 in PTB and IL-1β in EPTB patients. 31226436 2019
Entrez Id: 5725
Gene Symbol: PTBP1
PTBP1
0.050 Biomarker disease BEFREE By binary logistic regression, we observed that female gender (O.R.(95% C.I.): 1.95 (1.08-3.50), p < 0.05), Asian origin (5.70 (2.00-16.24), p < 0.001) and multimorbidity (6.42 (2.37-17.41), p < 0.001) were significantly associated to the development of EPTB compared to PTB. 31825907 2018
Entrez Id: 58155
Gene Symbol: PTBP2
PTBP2
0.050 Biomarker disease BEFREE By binary logistic regression, we observed that female gender (O.R.(95% C.I.): 1.95 (1.08-3.50), p < 0.05), Asian origin (5.70 (2.00-16.24), p < 0.001) and multimorbidity (6.42 (2.37-17.41), p < 0.001) were significantly associated to the development of EPTB compared to PTB. 31825907 2018
Entrez Id: 6347
Gene Symbol: CCL2
CCL2
0.020 GeneticVariation disease BEFREE CCR2 V64I (G/A), monocyte chemoattractant protein-1 (MCP-1) -2518 A/G, stromal cell derived factor-1alpha; (SDF-1alpha) 3'UTR G/A and DC-SIGN gene polymorphisms were studied by polymerase chain reaction based methods in HIV-1 infected patients without TB (n=151), with pulmonary TB (PTB) (n=81) and extrapulmonary TB (n=31), 155 PTB patients without HIV and 206 healthy controls. 19942750 2009
Entrez Id: 30835
Gene Symbol: CD209
CD209
0.010 GeneticVariation disease BEFREE CCR2 V64I (G/A), monocyte chemoattractant protein-1 (MCP-1) -2518 A/G, stromal cell derived factor-1alpha; (SDF-1alpha) 3'UTR G/A and DC-SIGN gene polymorphisms were studied by polymerase chain reaction based methods in HIV-1 infected patients without TB (n=151), with pulmonary TB (PTB) (n=81) and extrapulmonary TB (n=31), 155 PTB patients without HIV and 206 healthy controls. 19942750 2009
Entrez Id: 5725
Gene Symbol: PTBP1
PTBP1
0.050 Biomarker disease BEFREE Clustered and unique EPTB notifications showed a seasonal trend that was absent in clustered and unique PTB notifications. 24125452 2013
Entrez Id: 58155
Gene Symbol: PTBP2
PTBP2
0.050 Biomarker disease BEFREE Clustered and unique EPTB notifications showed a seasonal trend that was absent in clustered and unique PTB notifications. 24125452 2013
Entrez Id: 5027
Gene Symbol: P2RX7
P2RX7
0.040 GeneticVariation disease BEFREE Collectively, our results suggest that the P2X7 1513A/C loss-of-function polymorphism may contribute to susceptibility to epTB in Tunisian populations. 21635566 2011
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 1521
Gene Symbol: CTSW
CTSW
0.010 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 939
Gene Symbol: CD27
CD27
0.010 Biomarker disease BEFREE Compared with the control sample, the expression of 16 genes, including those for tumour necrosis factor (TNF)-alpha and cathepsin W, was increased, and the expression of 45 genes including that for TNF-receptor superfamily member 7 (TNFRSF7), was decreased in the extrapulmonary tuberculosis patients. 16916327 2006
Entrez Id: 399668
Gene Symbol: SMIM10L2A
SMIM10L2A
0.020 Biomarker disease BEFREE Comparison of GeneXpert MTB/RIF assay and LED-FM microscopy for the diagnosis of extra pulmonary tuberculosis in Khyber Pakhtunkhwa, Pakistan. 29752010 2018
Entrez Id: 644596
Gene Symbol: SMIM10L2B
SMIM10L2B
0.020 Biomarker disease BEFREE Comparison of GeneXpert MTB/RIF assay and LED-FM microscopy for the diagnosis of extra pulmonary tuberculosis in Khyber Pakhtunkhwa, Pakistan. 29752010 2018
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.010 AlteredExpression disease BEFREE Finally, FoxP3 expression was increased 2.3-fold in patients with extrapulmonary TB compared with patients with purely pulmonary TB (p = 0.01) and was amplified 2.6-fold at disease sites relative to blood (p = 0.043). 16339919 2006
Entrez Id: 6347
Gene Symbol: CCL2
CCL2
0.020 GeneticVariation disease BEFREE Genomic DNA from patients with active TB (168 cases of pulmonary TB and 55 cases of extrapulmonary TB) and ethnically controls (150 cases) was genotyped for the MCP-1 -2518 A/G SNP by polymerase chain reaction fragment length polymorphism (PCR-RFLP). 21384169 2011