Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 340061
Gene Symbol: STING1
STING1
0.010 Biomarker disease BEFREE Overproduction of the STING agonist c-di-AMP significantly enhanced the protective efficacy of BCG against pulmonary and extrapulmonary tuberculosis. 30901058 2020
Entrez Id: 22900
Gene Symbol: CARD8
CARD8
0.010 GeneticVariation disease BEFREE There was a significant association between homozygotes in the CARD8 polymorphism and extrapulmonary TB (EPTB), which was not the case for pulmonary TB or HDs. 30816317 2019
Entrez Id: 2069
Gene Symbol: EREG
EREG
0.010 GeneticVariation disease BEFREE Moreover, the rs6446993 polymorphism of the EREG gene was found to be associated with EPTB (P = 0.00087, OR = 1.54; 95% CI = 1.23-1.94). 30634928 2019
Entrez Id: 3929
Gene Symbol: LBP
LBP
0.010 Biomarker disease BEFREE Plasma levels of C-reactive protein, matrix metalloproteinase-7 and lipopolysaccharide-binding protein distinguish active pulmonary or extrapulmonary tuberculosis from uninfected controls in children. 31299414 2019
Entrez Id: 253962
Gene Symbol: CACNA1G-AS1
CACNA1G-AS1
0.010 GeneticVariation disease BEFREE URAL2 (NEW-1) (28/88; 31.8%) and CAS1-DELHI (25/84; 29.8%) genotypes were predominant in EPTB and PTB strains, respectively. 30513341 2019
Entrez Id: 6402
Gene Symbol: SELL
SELL
0.010 Biomarker disease BEFREE Notably, LAM I-PCR revealed sensitivities of 74.3 and 67.9% in PTB (n = 74) and EPTB (n = 53) patients, respectively, with specificities of 91.5-92.8% (n = 116). 31549171 2019
Entrez Id: 406938
Gene Symbol: MIR146A
MIR146A
0.010 Biomarker disease BEFREE Taqman based qRT-PCR analysis of host-genome encoded (hsa-miR-146a-5p and hsa-miR-125b-5p) and MTB genome encoded (MTB-miR5) miRNAs showed increased expression in a cohort of 52 healthy, pulmonary tuberculosis (PTB) and extra pulmonary tuberculosis (EPTB) patients serum samples. 31153517 2019
Entrez Id: 3627
Gene Symbol: CXCL10
CXCL10
0.010 Biomarker disease BEFREE In conclusion, the DPS/DBS IP-10 assay allows for easy and manageable monitoring in low-resource settings and our findings suggest that IP-10 may serve as a biomarker for treatment efficacy in EPTB patients, albeit further studies in cohorts of patients with treatment failure and relapse are needed. 30846768 2019
Entrez Id: 114548
Gene Symbol: NLRP3
NLRP3
0.010 GeneticVariation disease BEFREE Polymorphisms in CARD8 and NLRP3 are associated with extrapulmonary TB and poor clinical outcome in active TB in Ethiopia. 30816317 2019
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.010 GeneticVariation disease BEFREE In difficult-to-treat entities such as extrapulmonary TB in HIV patients, FDG PET/CT is a potential tool in monitoring TB treatment response and should be explored in larger studies. 30015658 2018
Entrez Id: 100
Gene Symbol: ADA
ADA
0.010 Biomarker disease BEFREE Adenosine deaminase (ADA) is used to diagnose several settings of extra-pulmonary tuberculosis but it is limited in TBM especially among HIV-infected patients. 29705393 2018
Entrez Id: 7422
Gene Symbol: VEGFA
VEGFA
0.010 AlteredExpression disease BEFREE <b>Results:</b> While all of the studied cytokine secretions varied after <i>in vitro</i> infection, higher levels of TNF-α and VEGF secretions were observed <i>in vitro</i> in the infected macrophages respectively in the PTB and EPTB infecting clinical isolates. 29515555 2018
Entrez Id: 57817
Gene Symbol: HAMP
HAMP
0.010 GeneticVariation disease BEFREE Association of Single-Nucleotide Polymorphism in the Hepcidin Promoter Gene with Susceptibility to Extrapulmonary Tuberculosis. 28530443 2017
Entrez Id: 3965
Gene Symbol: LGALS9
LGALS9
0.010 Biomarker disease BEFREE Secretion of IFN-γ Associated with Galectin-9 Production by Pleural Fluid Cells from a Patient with Extrapulmonary Tuberculosis. 28657598 2017
Entrez Id: 2309
Gene Symbol: FOXO3
FOXO3
0.010 GeneticVariation disease BEFREE The results showed that the G allele of rs12212067 in FOXO3 was more common in health control and the latent TB group compared with the active TB group (p = 0.048, odds ratio (OR) 95 % confidence intervals (CI) = 1.37 (1.00-1.89); p = 0.042, OR 95 % CI = 1.42 (1.01-1.99), respectively); furthermore, within active TB patients, the G allele of rs12212067 in FOXO3 was more frequent in extra-pulmonary tuberculosis (EPTB) group compared to pulmonary tuberculosis (PTB) group (p = 0.035, OR 95 % CI = 0.57 (0.33-0.97). 26223437 2016
Entrez Id: 3459
Gene Symbol: IFNGR1
IFNGR1
0.010 GeneticVariation disease BEFREE Allele T frequencies of IFNγR1 -56 C/T promoter region in patients with pulmonary TB (PTB) or extrapulmonary TB (EPTB) were significantly greater than allele C. The -56 TT motif of IFNγR1 is associated with both forms of TB (p<0.05). 27941164 2016
Entrez Id: 6376
Gene Symbol: CX3CL1
CX3CL1
0.010 Biomarker disease BEFREE The aim of this study is to know the prevalence of NTN among extrapulmonary tuberculosis cases in tertiary care centers in Northern India. 25883962 2015
Entrez Id: 4902
Gene Symbol: NRTN
NRTN
0.010 Biomarker disease BEFREE The aim of this study is to know the prevalence of NTN among extrapulmonary tuberculosis cases in tertiary care centers in Northern India. 25883962 2015
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.010 GeneticVariation disease BEFREE We also performed the analyses by sample types in IL-6 -174 C/G polymorphism, and significant decreased TB risk was observed in pulmonary tuberculosis group (C allele vs. G allele: OR=0.69, 95% CI=0.52-0.93; CG vs. GG: OR=0.69, 95% CI=0.52-0.91; CC+CG vs. GG: OR=0.71, 95% CI=0.55-0.93), and pulmonary tuberculosis plus extra-pulmonary tuberculosis mixed group (CC vs. GG: OR=0.44, 95% CI=0.22-0.88; CC vs. CG+GG: OR=0.48, 95% CI=0.25-0.94). 26169021 2015
Entrez Id: 55660
Gene Symbol: PRPF40A
PRPF40A
0.010 Biomarker disease BEFREE The diplotype LYQA/HYPA was present in 12 out of 57 of the pulmonary TB cases but in none of the extrapulmonary TB patients. 24910008 2014
Entrez Id: 3565
Gene Symbol: IL4
IL4
0.010 GeneticVariation disease BEFREE In conclusion, rs2243268-A and rs2243274-G of the IL-4 gene were found to confer resistance to EPTB and severe TB in Chinese Han children. 24518693 2014
Entrez Id: 4048
Gene Symbol: LTA4H
LTA4H
0.010 GeneticVariation disease BEFREE The present findings suggest that polymorphisms in the LTA4H gene may affect susceptibility to extra-pulmonary tuberculosis and change the risk of developing the disease in the Han nationality in the East China. 25257262 2014
Entrez Id: 1576
Gene Symbol: CYP3A4
CYP3A4
0.010 Biomarker disease BEFREE Genotype distribution inversion in extrapulmonary TB cases suggests that CYP3A4 may be involved in TB prognosis. 21964586 2012
Entrez Id: 3587
Gene Symbol: IL10RA
IL10RA
0.010 GeneticVariation disease BEFREE In conclusion, our study suggested the possible role of IL-10R1 S138G loss-of-function polymorphism in extrapulmonary TB susceptibility-resistance in Tunisia. 21553229 2012
Entrez Id: 30835
Gene Symbol: CD209
CD209
0.010 GeneticVariation disease BEFREE CCR2 V64I (G/A), monocyte chemoattractant protein-1 (MCP-1) -2518 A/G, stromal cell derived factor-1alpha; (SDF-1alpha) 3'UTR G/A and DC-SIGN gene polymorphisms were studied by polymerase chain reaction based methods in HIV-1 infected patients without TB (n=151), with pulmonary TB (PTB) (n=81) and extrapulmonary TB (n=31), 155 PTB patients without HIV and 206 healthy controls. 19942750 2009