Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 326
Gene Symbol: AIRE
AIRE
0.010 GeneticVariation disease BEFREE In addition, we analyzed five other family members out of three generations for the AIRE gene mutation and for polymorphisms in the cytotoxic T lymphocyte antigen 4 (CTLA4) gene region and lymphoid protein tyrosine phosphatase (PTPN22) gene, which are associated with the occurrence of sporadic autoimmune Addison's disease, type 1 diabetes mellitus, and generalized vitiligo. 19209622 2008
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.010 GeneticVariation disease BEFREE Frequency of COX2-1195 AA, AG, GG genotypes showed no significant association among patients with vitiligo (P = 0.626, 0.321, 0.08, respectively); those with generalized vitiligo (P = 0.739, 0.291, 0.101, respectively) and those with segmental vitiligo (P = 0.410, 1.00, 0.676, respectively) compared to the control group. 29094684 2019
Entrez Id: 10665
Gene Symbol: TSBP1
TSBP1
0.010 GeneticVariation disease BEFREE We identified a quantitative trait locus for vitiligo age of onset in the major histocompatibility complex (MHC) class II region, located near c6orf10-BTNL2 (rs7758128; P=8.14 × 10(-11)), a region that is also associated with generalized vitiligo susceptibility. 21326295 2011
Entrez Id: 85480
Gene Symbol: TSLP
TSLP
0.010 GeneticVariation disease BEFREE Collectively, C allele at the TSLP -847C>T polymorphism may increase susceptibility to generalized vitiligo through decreasing TSLP mRNA expression levels. 19555430 2009
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
0.010 GeneticVariation disease BEFREE The alleles HLA-A*32 (P = 0.0156, Pc = 0.3120, OR = 22.43, 95% CI = 1.12-449.46) and HLA-DQB1*06 (P = 0.0207, Pc = 0.1035, OR = 0.28, 95% CI = 0.10-0.81) were associated with both localized and generalized vitiligo. 26769539 2016
Entrez Id: 27086
Gene Symbol: FOXP1
FOXP1
0.010 GeneticVariation disease BEFREE By testing additional loci that showed suggestive association in the genome-wide study, using two replication cohorts of European descent, we observed replicated association of generalized vitiligo with variants at 3p13 encompassing FOXP1 (rs17008723, combined P=1.04x10(-8)) and with variants at 6q27 encompassing CCR6 (rs6902119, combined P=3.94x10(-7)). 20526340 2010
Entrez Id: 2944
Gene Symbol: GSTM1
GSTM1
0.010 GeneticVariation disease BEFREE This study showed a significant trend towards an association with the combination of the GSTM1/GSTT1 double null polymorphism and generalized vitiligo. 29641697 2018
Entrez Id: 7299
Gene Symbol: TYR
TYR
0.010 GeneticVariation disease BEFREE We also detected associations between generalized vitiligo and SNPs in two additional immune-related loci, RERE (P=7.07x10(-15)) and GZMB (P=3.44x10(-8)), and in a locus containing TYR (P=1.60x10(-18)), encoding tyrosinase. 20410501 2010
Entrez Id: 22861
Gene Symbol: NLRP1
NLRP1
0.050 Biomarker disease BEFREE These results indicate that NALP1 is associated with susceptibility to generalized vitiligo in Arabs, as in Caucasians. 20574744 2010
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.050 Biomarker disease BEFREE These results implicate PTPN22 in mediating susceptibility to generalized vitiligo and associated autoimmune diseases, but do not support a role for CTLA4. 18200060 2008
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 Biomarker disease BEFREE We observed significantly raised levels of IL-2, -6, -17, -22, and TNF-α in both localized vitiligo and generalized vitiligo (P < .05). 29504235 2019
Entrez Id: 7494
Gene Symbol: XBP1
XBP1
0.030 Biomarker disease BEFREE Subsequent genomewide linkage studies identified NLRP1 and XBP1, apparent true GV susceptibility genes involved in immune regulation, and recent genome-wide association studies (GWAS) of GV in Caucasian and Chinese populations have yielded a large number of additional validated GV susceptibility genes. 21777851 2011
Entrez Id: 7494
Gene Symbol: XBP1
XBP1
0.030 Biomarker disease BEFREE Comprehensive association analysis of candidate genes for generalized vitiligo supports XBP1, FOXP3, and TSLP. 21085187 2011
Entrez Id: 7494
Gene Symbol: XBP1
XBP1
0.030 Biomarker disease BEFREE Later, genome-wide linkage studies of multiplex GV families identified NLRP1 and XBP1, which appear to be valid GV susceptibility genes that control key aspects of immune regulation. 21993561 2012
Entrez Id: 3117
Gene Symbol: HLA-DQA1
HLA-DQA1
0.020 Biomarker disease BEFREE The extended haplotypes HLA-A25-B13-Cw*0602, HLA-A25-B27-Cw*0602, HLA-DQA1*0302-DQB1*0303-Cw*0602 and HLA-B13-DQB1*0303-Cw*0602 were found to be associated with all types of vitiligo in Chinese Hans, whereas the frequency of HLA-A25-Cw*0602-DQA1*0302 was significantly increased in generalized vitiligo but not in localized vitiligo. 16922942 2006
Entrez Id: 3117
Gene Symbol: HLA-DQA1
HLA-DQA1
0.020 Biomarker disease BEFREE The frequency of HLA-DQB1*0303 (OR = 3.72, P(c) < 0.001) allele was significantly increased in localized vitiligo patients vs. controls, whereas HLA-DQA1*0302 (OR = 2.47, P(c) < 0.01), -DQB1*0303 (OR = 2.67, P(c) < 0.01), and -DQB1*0503 (OR = 4.46, P(c) < 0.01) allele frequencies were significantly increased and -DQA1*0501 (OR = 0.27, P(c) < 0.01) allele frequency was highly decreased in generalized vitiligo patients. 16409268 2005
Entrez Id: 3002
Gene Symbol: GZMB
GZMB
0.010 Biomarker disease BEFREE We also detected associations between generalized vitiligo and SNPs in two additional immune-related loci, RERE (P=7.07x10(-15)) and GZMB (P=3.44x10(-8)), and in a locus containing TYR (P=1.60x10(-18)), encoding tyrosinase. 20410501 2010
Entrez Id: 473
Gene Symbol: RERE
RERE
0.010 Biomarker disease BEFREE We also detected associations between generalized vitiligo and SNPs in two additional immune-related loci, RERE (P=7.07x10(-15)) and GZMB (P=3.44x10(-8)), and in a locus containing TYR (P=1.60x10(-18)), encoding tyrosinase. 20410501 2010
Entrez Id: 373071
Gene Symbol: AIS1
AIS1
0.010 Biomarker disease BEFREE A genomewide screen for generalized vitiligo: confirmation of AIS1 on chromosome 1p31 and evidence for additional susceptibility loci. 12707860 2003
Entrez Id: 7054
Gene Symbol: TH
TH
0.010 Biomarker disease BEFREE Autoantibodies against tyrosine hydroxylase in patients with non-segmental (generalised) vitiligo. 21158937 2011
Entrez Id: 23765
Gene Symbol: IL17RA
IL17RA
0.010 Biomarker disease BEFREE Positive correlation of IL-17 (R = .238) with body surface area (BSA) was observed in patients with generalized vitiligo. 29504235 2019
Entrez Id: 2952
Gene Symbol: GSTT1
GSTT1
0.010 Biomarker disease BEFREE Individuals with GSTM1 null/GSTT1+ heterozygosis have a 2.97 odds protection from having generalized vitiligo compared with patients. 29641697 2018
Entrez Id: 3558
Gene Symbol: IL2
IL2
0.010 Biomarker disease BEFREE IL-2 was significantly raised (P = .028) in localized vitiligo, whereas IL-17 and IL-22 were significantly raised in generalized vitiligo (P = .00 and P = .019, respectively). 29504235 2019
Entrez Id: 3605
Gene Symbol: IL17A
IL17A
0.010 Biomarker disease BEFREE IL-2 was significantly raised (P = .028) in localized vitiligo, whereas IL-17 and IL-22 were significantly raised in generalized vitiligo (P = .00 and P = .019, respectively). 29504235 2019
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.010 Biomarker disease BEFREE To assess the serum levels of cytokines secreted by Th1 (IL-2, TNF-α), Th2 (IL-6), and Th17 cells (IL-17, IL-22) in patients with localized vitiligo and generalized vitiligo and to correlate their levels with the extent, duration, and activity of disease. 29504235 2019