Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 22861
Gene Symbol: NLRP1
NLRP1
0.050 AlteredExpression disease BEFREE A significant increase in NLRP1 mRNA expression was observed in patients with GV and patients with active GV. 23773036 2013
Entrez Id: 22861
Gene Symbol: NLRP1
NLRP1
0.050 GeneticVariation disease BEFREE Subsequent genomewide linkage studies identified NLRP1 and XBP1, apparent true GV susceptibility genes involved in immune regulation, and recent genome-wide association studies (GWAS) of GV in Caucasian and Chinese populations have yielded a large number of additional validated GV susceptibility genes. 21777851 2011
Entrez Id: 22861
Gene Symbol: NLRP1
NLRP1
0.050 Biomarker disease BEFREE These results indicate that NALP1 is associated with susceptibility to generalized vitiligo in Arabs, as in Caucasians. 20574744 2010
Entrez Id: 22861
Gene Symbol: NLRP1
NLRP1
0.050 GeneticVariation disease BEFREE We previously reported the linkage signals on chromosomes 1, 7, and 17 in Caucasian families with generalized vitiligo and associated autoimmune diseases and identified the risk loci of chromosomes 17 and 1 as NLRP1 (NALP1) and FOXD3, respectively. 19727120 2010
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.050 GeneticVariation disease BEFREE Our results provide evidence that the PTPN22 1858T allele contributes to risk of generalized vitiligo in European Caucasian populations, and underscores the importance of a genetically mediated autoimmune mechanism in the pathogenesis of vitiligo. 18426414 2008
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.050 GeneticVariation disease BEFREE In addition, we analyzed five other family members out of three generations for the AIRE gene mutation and for polymorphisms in the cytotoxic T lymphocyte antigen 4 (CTLA4) gene region and lymphoid protein tyrosine phosphatase (PTPN22) gene, which are associated with the occurrence of sporadic autoimmune Addison's disease, type 1 diabetes mellitus, and generalized vitiligo. 19209622 2008
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.050 Biomarker disease BEFREE These results implicate PTPN22 in mediating susceptibility to generalized vitiligo and associated autoimmune diseases, but do not support a role for CTLA4. 18200060 2008
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.050 GeneticVariation disease BEFREE The discovery that a single-nucleotide polymorphism (SNP) in lymphoid tyrosine phosphatase (LYP), encoded by the PTPN22 gene, is associated with type 1 diabetes (T1D) has now been verified by numerous studies and has been expanded to rheumatoid arthritis, juvenile rheumatoid arthritis (JRA), systemic lupus erythematosus, Graves' disease, generalized vitiligo and other human autoimmune diseases. 17729039 2007
Entrez Id: 22861
Gene Symbol: NLRP1
NLRP1
0.050 GeneticVariation disease BEFREE These findings support the involvement of NALP1 in predisposition to generalized vitiligo. 17637824 2007
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.050 GeneticVariation disease BEFREE The objective of this study was to ascertain if the disease-associated 1858T allele was also associated with generalised (nonsegmental) vitiligo and so the frequencies of the PTPN22 1858C/T alleles were investigated in 165 English patients with generalised vitiligo and 304 ethnically matched control subjects. 16015369 2005
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 Biomarker disease BEFREE We observed significantly raised levels of IL-2, -6, -17, -22, and TNF-α in both localized vitiligo and generalized vitiligo (P < .05). 29504235 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 GeneticVariation disease BEFREE A subgroup analysis by clinical type also demonstrated the absence of any association between TNF-α-308 G/A polymorphism and generalized vitiligo. 26224639 2015
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.030 AlteredExpression disease BEFREE Also, the TNF-α levels were high in patients with generalized vitiligo as compared to localized vitiligo. 23284977 2012
Entrez Id: 7494
Gene Symbol: XBP1
XBP1
0.030 Biomarker disease BEFREE Later, genome-wide linkage studies of multiplex GV families identified NLRP1 and XBP1, which appear to be valid GV susceptibility genes that control key aspects of immune regulation. 21993561 2012
Entrez Id: 7494
Gene Symbol: XBP1
XBP1
0.030 Biomarker disease BEFREE Subsequent genomewide linkage studies identified NLRP1 and XBP1, apparent true GV susceptibility genes involved in immune regulation, and recent genome-wide association studies (GWAS) of GV in Caucasian and Chinese populations have yielded a large number of additional validated GV susceptibility genes. 21777851 2011
Entrez Id: 7494
Gene Symbol: XBP1
XBP1
0.030 Biomarker disease BEFREE Comprehensive association analysis of candidate genes for generalized vitiligo supports XBP1, FOXP3, and TSLP. 21085187 2011
Entrez Id: 1493
Gene Symbol: CTLA4
CTLA4
0.030 GeneticVariation disease BEFREE Association of GV with CTLA4 (rs12992492, P=5.9E-05, OR=1.20; meta-P for rs231775=1.0E-04) seems to be secondary to epidemiological association with other concomitant autoimmune diseases. 21085187 2011
Entrez Id: 1493
Gene Symbol: CTLA4
CTLA4
0.030 GeneticVariation disease BEFREE In addition, we analyzed five other family members out of three generations for the AIRE gene mutation and for polymorphisms in the cytotoxic T lymphocyte antigen 4 (CTLA4) gene region and lymphoid protein tyrosine phosphatase (PTPN22) gene, which are associated with the occurrence of sporadic autoimmune Addison's disease, type 1 diabetes mellitus, and generalized vitiligo. 19209622 2008
Entrez Id: 1493
Gene Symbol: CTLA4
CTLA4
0.030 GeneticVariation disease BEFREE Examination of five SNPs in the CTLA4 gene (rs1863800, rs231775, rs3087243, rs11571302, rs11571297, rs10932037) in the same 126 families yielded no evidence of allelic or genotypic association with either generalized vitiligo or the expanded autoimmune phenotype. 18200060 2008
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.020 AlteredExpression disease BEFREE Narrow-band UVB (NB-UVB) treatment of vitiligo might act through its effects on vitamin D and its receptor.This study is the first to elucidate NB-UVB effects on immunohistochemical vitamin D receptor (VDR) expression in generalized vitiligo and correlate it with serum vitamin D and repigmentation response. 29080365 2018
Entrez Id: 847
Gene Symbol: CAT
CAT
0.020 GeneticVariation disease BEFREE CAT -89A/T and -20T/C polymorphisms were significantly associated with patients, especially with active and generalized vitiligo, whereas no association was observed for -262G/A and exon polymorphisms. 28542879 2017
Entrez Id: 847
Gene Symbol: CAT
CAT
0.020 GeneticVariation disease BEFREE In conclusion, the enhanced oxidative stress with the lack of association between CAT and COMT polymorphisms and susceptibility to vitiligo in our patients suggest that mutations in other genes related to the oxidative pathway might contribute to the etiology of generalized vitiligo in Egyptian population. 24915010 2014
Entrez Id: 1312
Gene Symbol: COMT
COMT
0.020 GeneticVariation disease BEFREE In conclusion, the enhanced oxidative stress with the lack of association between CAT and COMT polymorphisms and susceptibility to vitiligo in our patients suggest that mutations in other genes related to the oxidative pathway might contribute to the etiology of generalized vitiligo in Egyptian population. 24915010 2014
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.020 GeneticVariation disease BEFREE The association of vitamin D receptor gene polymorphisms and serum 25-hydroxyvitamin D levels with generalized vitiligo. 22762534 2012
Entrez Id: 1312
Gene Symbol: COMT
COMT
0.020 GeneticVariation disease BEFREE We found that compared to the COMT-158 GG genotype, the COMT-158 GA genotype (adjusted odds ratio [OR], 1.39; 95% confidence interval [CI], 1.13-1.72) and the combined GA + AA genotype (adjusted OR, 1.41; 95% CI, 1.15-1.74) were associated with an increased risk of generalized vitiligo. 19112571 2009