Source: ALL
Variant Gene N. diseases v DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs9277341
rs9277341
HLA-DPA1
3 0.882 0.280 6 33071848 intron variant T/A;C snv 0.700 1.000 1 2009 2009
dbSNP: rs231775
rs231775
CTLA4
115 0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 0.030 1.000 3 2010 2019
dbSNP: rs1049606
rs1049606
CCND2 ; CCND2-AS1
4 0.851 0.160 12 4273870 5 prime UTR variant C/T snv 0.58 0.010 < 0.001 1 2010 2010
dbSNP: rs11355458
rs11355458
HSPA5 ; LOC107987127
1 1.000 0.080 9 125241510 upstream gene variant CC/-;C;CCC;CCCC delins 0.010 1.000 1 2010 2010
dbSNP: rs1140763
rs1140763
HSPA5
1 1.000 0.080 9 125235313 3 prime UTR variant G/A;C snv 0.010 1.000 1 2010 2010
dbSNP: rs12009
rs12009
HSPA5
1 1.000 0.080 9 125235024 3 prime UTR variant G/A;T snv 0.54 0.010 1.000 1 2010 2010
dbSNP: rs17840761
rs17840761
HSPA5 ; LOC107987127
2 0.925 0.160 9 125241700 non coding transcript exon variant G/A snv 0.55 0.010 1.000 1 2010 2010
dbSNP: rs1800629
rs1800629
TNF
169 0.472 0.920 6 31575254 upstream gene variant G/A snv 0.12 0.14 0.010 1.000 1 2010 2010
dbSNP: rs2267716
rs2267716
CRHR2
4 0.851 0.120 7 30677027 intron variant T/A;C snv 0.010 1.000 1 2010 2010
dbSNP: rs361525
rs361525
TNF
62 0.562 0.760 6 31575324 upstream gene variant G/A snv 4.6E-02 0.010 1.000 1 2010 2010
dbSNP: rs7453920
rs7453920
HLA-DQB2
10 0.752 0.440 6 32762235 intron variant A/G;T snv 0.880 0.909 11 2011 2017
dbSNP: rs2856718
rs2856718 		8 0.790 0.360 6 32702478 downstream gene variant C/T snv 0.34 0.860 1.000 8 2011 2017
dbSNP: rs8099917
rs8099917 		60 0.581 0.600 19 39252525 upstream gene variant T/G snv 0.16 0.080 0.750 8 2011 2017
dbSNP: rs17401966
rs17401966
KIF1B
7 0.790 0.280 1 10325413 intron variant A/G snv 0.24 0.730 0.750 4 2011 2019
dbSNP: rs738409
rs738409
PNPLA3
88 0.557 0.720 22 43928847 missense variant C/G snv 0.28 0.22 0.730 1.000 4 2011 2019
dbSNP: rs12980275
rs12980275 		23 0.701 0.360 19 39241143 upstream gene variant A/G snv 0.36 0.030 0.667 3 2011 2015
dbSNP: rs1431399
rs1431399
HLA-DPA1
1 1.000 0.080 6 33073257 intron variant A/G;T snv 0.700 1.000 2 2011 2013
dbSNP: rs1799987
rs1799987
CCR5 ; CCR5AS
10 0.763 0.200 3 46370444 intron variant A/G snv 0.49 0.020 1.000 2 2011 2018
dbSNP: rs2647050
rs2647050 		4 0.882 0.240 6 32701990 downstream gene variant T/C snv 0.36 0.700 1.000 2 2011 2013
dbSNP: rs568408
rs568408
IL12A ; IL12A-AS1
29 0.649 0.600 3 159995680 3 prime UTR variant G/A snv 0.16 0.020 1.000 2 2011 2013
dbSNP: rs671
rs671
ALDH2
116 0.529 0.840 12 111803962 missense variant G/A snv 1.9E-02 5.8E-03 0.710 1.000 2 2011 2019
dbSNP: rs7773694
rs7773694 		3 0.882 0.280 6 32738557 upstream gene variant A/G snv 0.80 0.700 1.000 2 2011 2013
dbSNP: rs9276370
rs9276370
HLA-DQA2
3 0.882 0.200 6 32739518 upstream gene variant G/T snv 0.51 0.710 1.000 2 2011 2014
dbSNP: rs9277554
rs9277554
HLA-DPB1
7 0.790 0.520 6 33087761 3 prime UTR variant C/T snv 0.38 0.700 1.000 2 2011 2013
dbSNP: rs9469341
rs9469341
HLA-DPA1
1 1.000 0.080 6 33068100 3 prime UTR variant A/C;G snv 0.700 1.000 2 2011 2013