Disease: Childhood Acute Lymphoblastic Leukemia
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1966862
ARHGAP24
0.790 0.120 4 85766908 intron variant A/G snv 0.14 8
rs200378616
ABCB1
0.882 0.120 7 87544938 missense variant G/C;T snv 4.0E-05; 8.0E-06 3
rs2274407
ABCC4
0.882 0.120 13 95206781 missense variant C/A;G;T snv 9.7E-02 0.10 4
rs2413739
PACSIN2
0.827 0.120 22 43001030 intron variant C/T snv 0.43 6
rs2742038
TLX1 ; TLX1NB
0.882 0.120 10 101137330 3 prime UTR variant C/T snv 0.16 3
rs35134728
C1orf167 ; MTHFR
0.882 0.120 1 11787277 3 prime UTR variant -/AGA delins 3
rs368005287
CYP3A4
0.882 0.120 7 99762071 stop gained C/T snv 1.2E-05 7.0E-06 3
rs3731246
CDKN2A
0.882 0.120 9 21971990 intron variant C/G snv 0.11 3
rs3737966
C1orf167 ; MTHFR
0.882 0.120 1 11787702 3 prime UTR variant C/T snv 0.55 3
rs3758149
GGH
0.882 0.120 8 63039169 upstream gene variant G/A snv 0.24 3
rs3794012
LMO1
0.882 0.120 11 8248697 intron variant T/C snv 0.32 3
rs41320251
ITPA
0.882 0.120 20 3213196 missense variant C/A;G snv 3
rs414580
MSR1
0.882 0.120 8 16177793 intron variant T/A;C snv 3
rs4149009
SLCO1A2
0.882 0.120 12 21267537 3 prime UTR variant C/T snv 0.38 3
rs4237770
LMO1
0.882 0.120 11 8254288 intron variant T/C snv 0.37 3
rs442264
LMO1
0.882 0.120 11 8242602 intron variant G/A snv 0.44 3
rs4646450
CYP3A5 ; ZSCAN25
0.882 0.120 7 99668695 3 prime UTR variant G/A snv 0.38 4
rs4748793 0.851 0.120 10 22194082 intergenic variant A/G snv 0.18 4
rs525549
KMT2A
0.882 0.120 11 118487353 intron variant T/A snv 0.33 3
rs57725551
LOC107987304 ; SLC19A1
0.882 0.120 21 45525868 synonymous variant G/T snv 5.3E-03 7.0E-03 3
rs6021191
NFATC2
0.851 0.120 20 51419700 intron variant A/T snv 4.9E-02 5
rs62571442
MIR3689F ; LOC101448202 ; MIR3689E ; MIR3689D1 ; MIR3689D2 ; MIR3689C ; MIR3689B ; MIR3689A
0.882 0.120 9 134850278 non coding transcript exon variant G/A;C;T snv 0.58; 4.4E-03 3
rs6461639
RAPGEF5
0.882 0.120 7 22147337 intron variant T/A;C snv 3
rs6589664
TMEM25
0.882 0.120 11 118534089 synonymous variant G/A snv 0.30 0.27 3
rs6964969
IKZF1
0.851 0.120 7 50405553 downstream gene variant A/G snv 0.23 4