DisGeNET - a database of gene-disease associations

List of shared variants

Neoplasms, C0027651

Disease: Malignant neoplasm of stomach

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1051740	EPHX1	0.592	0.760	1	225831932	missense variant	T/C	snv	0.32	0.27	56
rs10889677	IL23R	0.627	0.720	1	67259437	3 prime UTR variant	C/A	snv		0.27	40
rs12083239		0.925	0.080	1	39985357	intergenic variant	G/A;C	snv			3
rs1217691063	MTHFR	0.330	0.920	1	11796309	missense variant	A/G	snv	4.0E-06	7.0E-06	614
rs12733285	ADIPOR1	0.776	0.120	1	202952912	intron variant	C/T	snv		0.26	12
rs1342387	ADIPOR1	0.776	0.120	1	202945228	intron variant	T/C	snv		0.53	12
rs145204276	ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76	0.658	0.320	1	173868254	splice donor variant	CAAGG/-	delins		8.8E-02	31
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs1801133	MTHFR	0.472	0.880	1	11796321	missense variant	G/A	snv	0.31	0.27	174
rs1805087	MTR	0.496	0.800	1	236885200	missense variant	A/G	snv	0.20	0.21	135
rs2172362	LOC105378667	0.925	0.080	1	39829228	intergenic variant	T/C	snv		0.58	3
rs230310	TRIT1	0.925	0.080	1	39842047	intron variant	A/G;T	snv			3
rs3790843	NR5A2	0.827	0.160	1	200041696	intron variant	C/T	snv		0.29	7
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs4072037	MUC1	0.732	0.240	1	155192276	splice acceptor variant	C/A;T	snv	0.59		22
rs4245739	MDM4	0.708	0.360	1	204549714	3 prime UTR variant	C/A;G	snv	0.77; 6.2E-06		21
rs5273	PTGS2	0.827	0.080	1	186674636	missense variant	A/C;G	snv	4.0E-06; 7.6E-03	1.4E-02	6
rs689466	PACERR ; PTGS2	0.637	0.640	1	186681619	upstream gene variant	T/C	snv		0.17	33
rs1143623	IL1B	0.677	0.440	2	112838252	upstream gene variant	C/G	snv		0.24	29
rs13420827	DNMT3A	0.882	0.160	2	25231099	3 prime UTR variant	C/G;T	snv			4
rs17664	ITGA6	0.882	0.120	2	172504503	3 prime UTR variant	A/G;T	snv			4
rs3783553	IL1A	0.667	0.480	2	112774138	3 prime UTR variant	-/TGAA	delins			26
rs3834129	CASP8	0.627	0.560	2	201232809	upstream gene variant	AGTAAG/-	del		0.48	38
rs763059810	CXCR4	0.623	0.600	2	136115750	missense variant	T/C	snv	4.0E-06		41
rs1050450	GPX1	0.623	0.600	3	49357401	missense variant	G/A	snv	0.28	0.30	43