Disease: Malignant neoplasm of stomach
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1131691014
TP53
0.439 0.800 17 7676154 frameshift variant -/C ins 214
rs3783553
IL1A
0.667 0.480 2 112774138 3 prime UTR variant -/TGAA delins 26
rs4796030
LIG3
0.827 0.120 17 35003131 3 prime UTR variant A/C snv 0.66 6
rs5273
PTGS2
0.827 0.080 1 186674636 missense variant A/C;G snv 4.0E-06; 7.6E-03 1.4E-02 6
rs854560
PON1
0.513 0.800 7 95316772 missense variant A/C;G;N;T snv 0.29 113
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63 99
rs1447295
CASC8
0.658 0.400 8 127472793 intron variant A/C;T snv 29
rs2032582
ABCB1
0.538 0.800 7 87531302 missense variant A/C;T snv 0.54; 3.8E-02 97
rs2273535
AURKA
0.645 0.360 20 56386485 missense variant A/C;T snv 0.28 38
rs699947
VEGFA
0.570 0.680 6 43768652 upstream gene variant A/C;T snv 67
rs1126772
SPP1
0.851 0.320 4 87983034 3 prime UTR variant A/G snv 0.16 5
rs11615
ERCC1
0.572 0.640 19 45420395 synonymous variant A/G snv 0.50 0.55 62
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs13252298
PCAT2 ; PCAT1 ; PRNCR1 ; CASC19
0.827 0.160 8 127082911 non coding transcript exon variant A/G snv 0.24 8
rs148704956
IL17A
0.716 0.360 6 52187772 missense variant A/G snv 8.0E-06 7.0E-06 19
rs1536309
MIR146B
0.851 0.160 10 102435445 upstream gene variant A/G snv 0.32 7
rs16901946
PCAT1 ; CASC19 ; PRNCR1
0.827 0.160 8 127088680 non coding transcript exon variant A/G snv 1.7E-02 8
rs1695
GSTP1
0.457 0.880 11 67585218 missense variant A/G snv 0.34 0.36 188
rs1800469
B9D2 ; TGFB1
0.547 0.760 19 41354391 intron variant A/G snv 0.69 78
rs1800625
AGER ; PBX2
0.641 0.680 6 32184665 upstream gene variant A/G snv 0.15 39
rs1801394
FASTKD3 ; MTRR
0.531 0.840 5 7870860 missense variant A/G snv 0.47 0.45 101
rs1805087
MTR
0.496 0.800 1 236885200 missense variant A/G snv 0.20 0.21 135
rs2274223
PLCE1
0.620 0.400 10 94306584 missense variant A/G snv 0.28 0.31 40
rs2735940
TERT
0.689 0.400 5 1296371 upstream gene variant A/G snv 0.49 25
rs2853669
TERT
0.649 0.320 5 1295234 upstream gene variant A/G snv 0.25 35