Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2523946
rs2523946
Entrez Id: 3105;10255
Gene Symbol: HLA-A;HCG9
HLA-A;HCG9
CUI: C0017661
Disease:
IGA Glomerulonephritis
C 0.800 GeneticVariation GWASCAT Identification of new susceptibility loci for IgA nephropathy in Han Chinese. 26028593 2015
dbSNP: rs9260489
rs9260489
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0201910
Disease:
Beta-2-microglobulin measurement
G 0.800 GeneticVariation GWASDB Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin. 23417110 2013
dbSNP: rs9260489
rs9260489
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0201910
Disease:
Beta-2-microglobulin measurement
G 0.800 GeneticVariation GWASCAT Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin. 23417110 2013
dbSNP: rs2523946
rs2523946
Entrez Id: 3105;10255
Gene Symbol: HLA-A;HCG9
HLA-A;HCG9
CUI: C0017661
Disease:
IGA Glomerulonephritis
C 0.800 GeneticVariation GWASDB A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. 22197929 2011
dbSNP: rs2523946
rs2523946
Entrez Id: 3105;10255
Gene Symbol: HLA-A;HCG9
HLA-A;HCG9
CUI: C0017661
Disease:
IGA Glomerulonephritis
C 0.800 GeneticVariation GWASCAT A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. 22197929 2011
dbSNP: rs3893464
rs3893464
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0018213
Disease:
Graves Disease
G 0.800 GeneticVariation GWASCAT Multivariate stepwise logistic regression analysis selected rs3893464, rs4313034, rs3132613, rs4248154, rs2273017, rs9394159 and rs4713693, as markers for independent risk loci for GD. 21900946 2011
dbSNP: rs3893464
rs3893464
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0018213
Disease:
Graves Disease
G 0.800 GeneticVariation GWASDB Multivariate stepwise logistic regression analysis selected rs3893464, rs4313034, rs3132613, rs4248154, rs2273017, rs9394159 and rs4713693, as markers for independent risk loci for GD. 21900946 2011
dbSNP: rs4313034
rs4313034
Entrez Id: 3105;3137;80862
Gene Symbol: HLA-A;HLA-J;ZNRD1ASP
HLA-A;HLA-J;ZNRD1ASP
CUI: C0018213
Disease:
Graves Disease
T 0.800 GeneticVariation GWASDB Multivariate stepwise logistic regression analysis selected rs3893464, rs4313034, rs3132613, rs4248154, rs2273017, rs9394159 and rs4713693, as markers for independent risk loci for GD. 21900946 2011
dbSNP: rs4313034
rs4313034
Entrez Id: 3105;3137;80862
Gene Symbol: HLA-A;HLA-J;ZNRD1ASP
HLA-A;HLA-J;ZNRD1ASP
CUI: C0018213
Disease:
Graves Disease
T 0.800 GeneticVariation GWASCAT Multivariate stepwise logistic regression analysis selected rs3893464, rs4313034, rs3132613, rs4248154, rs2273017, rs9394159 and rs4713693, as markers for independent risk loci for GD. 21900946 2011
dbSNP: rs9260489
rs9260489
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0026769
Disease:
Multiple Sclerosis
T 0.800 GeneticVariation GWASCAT Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci. 22190364 2011
dbSNP: rs9260489
rs9260489
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0026769
Disease:
Multiple Sclerosis
T 0.800 GeneticVariation GWASDB Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci. 22190364 2011
dbSNP: rs3823355
rs3823355
Entrez Id: 3105;10255
Gene Symbol: HLA-A;HCG9
HLA-A;HCG9
CUI: C0042900
Disease:
Vitiligo
T 0.800 GeneticVariation GWASCAT Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo. 20410501 2010
dbSNP: rs3823355
rs3823355
Entrez Id: 3105;10255
Gene Symbol: HLA-A;HCG9
HLA-A;HCG9
CUI: C0042900
Disease:
Vitiligo
T 0.800 GeneticVariation GWASDB Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo. 20410501 2010
dbSNP: rs7758512
rs7758512
Entrez Id: 3105;80862
Gene Symbol: HLA-A;ZNRD1ASP
HLA-A;ZNRD1ASP
CUI: C1836231
Disease:
HIV-1, RESISTANCE TO
0.800 GeneticVariation GWASDB Common genetic variation and the control of HIV-1 in humans. 20041166 2009
dbSNP: rs7758512
rs7758512
Entrez Id: 3105;80862
Gene Symbol: HLA-A;ZNRD1ASP
HLA-A;ZNRD1ASP
CUI: C1836233
Disease:
AIDS, PROGRESSION TO
0.800 GeneticVariation GWASDB Common genetic variation and the control of HIV-1 in humans. 20041166 2009
dbSNP: rs7758512
rs7758512
Entrez Id: 3105;80862
Gene Symbol: HLA-A;ZNRD1ASP
HLA-A;ZNRD1ASP
CUI: C1836232
Disease:
ACQUIRED IMMUNODEFICIENCY SYNDROME, PROGRESSION TO
0.800 GeneticVariation GWASDB Common genetic variation and the control of HIV-1 in humans. 20041166 2009
dbSNP: rs7758512
rs7758512
Entrez Id: 3105;80862
Gene Symbol: HLA-A;ZNRD1ASP
HLA-A;ZNRD1ASP
CUI: C1836230
Disease:
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1, SUSCEPTIBILITY TO
0.800 GeneticVariation GWASCAT Common genetic variation and the control of HIV-1 in humans. 20041166 2009
dbSNP: rs7758512
rs7758512
Entrez Id: 3105;80862
Gene Symbol: HLA-A;ZNRD1ASP
HLA-A;ZNRD1ASP
CUI: C1836233
Disease:
AIDS, PROGRESSION TO
0.800 GeneticVariation GWASCAT Common genetic variation and the control of HIV-1 in humans. 20041166 2009
dbSNP: rs7758512
rs7758512
Entrez Id: 3105;80862
Gene Symbol: HLA-A;ZNRD1ASP
HLA-A;ZNRD1ASP
CUI: C1836231
Disease:
HIV-1, RESISTANCE TO
0.800 GeneticVariation GWASCAT Common genetic variation and the control of HIV-1 in humans. 20041166 2009
dbSNP: rs7758512
rs7758512
Entrez Id: 3105;80862
Gene Symbol: HLA-A;ZNRD1ASP
HLA-A;ZNRD1ASP
CUI: C1836230
Disease:
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1, SUSCEPTIBILITY TO
0.800 GeneticVariation GWASDB Common genetic variation and the control of HIV-1 in humans. 20041166 2009
dbSNP: rs7758512
rs7758512
Entrez Id: 3105;80862
Gene Symbol: HLA-A;ZNRD1ASP
HLA-A;ZNRD1ASP
CUI: C1836232
Disease:
ACQUIRED IMMUNODEFICIENCY SYNDROME, PROGRESSION TO
0.800 GeneticVariation GWASCAT Common genetic variation and the control of HIV-1 in humans. 20041166 2009
dbSNP: rs9260151
rs9260151
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0011854
Disease:
Diabetes Mellitus, Insulin-Dependent
0.720 GeneticVariation BEFREE In addition, nominal correlations were observed with HDL levels for rs559047 (P = 0.042), while LDL levels for rs9260151 (P = 0.032) in T1D individuals. 31827251 2020
dbSNP: rs9260151
rs9260151
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0011854
Disease:
Diabetes Mellitus, Insulin-Dependent
0.720 GeneticVariation BEFREE Conditional analyses suggested that the three identified variants in the MHC region were independent of each other. rs9260151 and rs3135002 have been associated with type 1 diabetes, whereas rs559047 and rs61211515 have not been associated with a risk of developing type 1 diabetes. 29404672 2018
dbSNP: rs9260151
rs9260151
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C0011854
Disease:
Diabetes Mellitus, Insulin-Dependent
T 0.720 GeneticVariation GWASCAT Conditional analyses suggested that the three identified variants in the MHC region were independent of each other. rs9260151 and rs3135002 have been associated with type 1 diabetes, whereas rs559047 and rs61211515 have not been associated with a risk of developing type 1 diabetes. 29404672 2018
dbSNP: rs2860580
rs2860580
Entrez Id: 3105
Gene Symbol: HLA-A
HLA-A
CUI: C2931822
Disease:
Nasopharyngeal carcinoma
0.720 GeneticVariation BEFREE In this study, in southern China, where NPC is endemic, a single nucleotide polymorphism (SNP) in the EBV-encoded <i>RPMS1</i> gene (locus 155391: G > A [G155391A]) and seven host SNPs (rs1412829, rs28421666, rs2860580, rs2894207, rs31489, rs6774494, and rs9510787) were confirmed to be significantly associated with NPC risk in 50 NPC cases versus 54 hospital-based controls with throat washing specimens and 1925 NPC cases versus 1947 hospital-based controls with buffy coat samples, respectively. 29221111 2017