SYN1, synapsin I, 6853

N. diseases: 80; N. variants: 16
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs12394306
rs12394306
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C0428472
Disease:
Serum HDL cholesterol measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs12394306
rs12394306
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C0202117
Disease:
Low density lipoprotein cholesterol measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs12394306
rs12394306
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C0392885
Disease:
High density lipoprotein measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs12394306
rs12394306
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C0428474
Disease:
Serum LDL cholesterol measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs137852560
rs137852560
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1845343
Disease:
Epilepsy, X-Linked, with Variable Learning Disabilities and Behavior Disorders
T 0.700 CausalMutation CLINVAR
dbSNP: rs1556857481
rs1556857481
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1845343
Disease:
Epilepsy, X-Linked, with Variable Learning Disabilities and Behavior Disorders
TG 0.700 GeneticVariation CLINVAR
dbSNP: rs1556860663
rs1556860663
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1845343
Disease:
Epilepsy, X-Linked, with Variable Learning Disabilities and Behavior Disorders
A 0.700 GeneticVariation CLINVAR
dbSNP: rs200533370
rs200533370
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1845343
Disease:
Epilepsy, X-Linked, with Variable Learning Disabilities and Behavior Disorders
C 0.700 CausalMutation CLINVAR
dbSNP: rs397514679
rs397514679
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1845343
Disease:
Epilepsy, X-Linked, with Variable Learning Disabilities and Behavior Disorders
A 0.700 CausalMutation CLINVAR
dbSNP: rs397514680
rs397514680
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1845343
Disease:
Epilepsy, X-Linked, with Variable Learning Disabilities and Behavior Disorders
T 0.700 CausalMutation CLINVAR
dbSNP: rs41298474
rs41298474
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1845343
Disease:
Epilepsy, X-Linked, with Variable Learning Disabilities and Behavior Disorders
A 0.700 GeneticVariation CLINVAR
dbSNP: rs4898
rs4898
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0339573
Disease:
Glaucoma, Primary Open Angle
0.030 GeneticVariation BEFREE The aim of presented work was to analyze the impact of particular polymorphic changes in the promoter regions of the -1607 1G/2G MMP1, -1562 C/T MMP9, -82 A/G MMP12, -511 C/T IL-1β, and 372 T/C TIMP1 genes on their expression level in POAG patients. 26120586 2015
dbSNP: rs4898
rs4898
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0339573
Disease:
Glaucoma, Primary Open Angle
0.030 GeneticVariation BEFREE Normal RA value was observed in patients with POAG group connected with the 372 T/C TIMP1 (anova, p < 0.05) and the -511 C/T IL-1β (anova, p < 0.05) genes polymorphisms occurrence. 23800300 2013
dbSNP: rs4898
rs4898
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0339573
Disease:
Glaucoma, Primary Open Angle
0.030 GeneticVariation BEFREE Association of MMP1-1607 1G/2G and TIMP1 372 T/C gene polymorphisms with risk of primary open angle glaucoma in a Polish population. 21709637 2011
dbSNP: rs6609533
rs6609533
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0022578
Disease:
Keratoconus
0.020 GeneticVariation BEFREE <b>Conclusions</b>: This study supports the hypothesis of a functional role for <i>COL4A3</i> (rs55703767, G/T), <i>MMP-9</i> (rs17576, A/G) and <i>TIMP-1</i> (rs6609533, A/G) SNPs in the pathogenesis of keratoconus. 31397194 2020
dbSNP: rs4898
rs4898
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0019196
Disease:
Hepatitis C
0.020 GeneticVariation BEFREE Besides normal routine laboratory testing for HCV, patients' sera were evaluated also for retinol, retinol-binding protein 4 and the following SNPs: PNPLA3 (rs738409), TM6SF2 (rs58542926), MBOAT7 (rs641738), IL28B (rs12979860), TIMP-1 (rs4898), TIMP-2 (rs8179090), NF-kB promoter (rs28362491). 31826071 2019
dbSNP: rs397514679
rs397514679
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C0524528
Disease:
Pervasive Development Disorder
0.020 GeneticVariation BEFREE A new Q555X mutation on the SYN1 gene was recently found in several members of a family segregating dyslexia, epilepsy, and autism spectrum disorder. 29671924 2018
dbSNP: rs397514679
rs397514679
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1510586
Disease:
Autism Spectrum Disorders
0.020 GeneticVariation BEFREE A new Q555X mutation on the SYN1 gene was recently found in several members of a family segregating dyslexia, epilepsy, and autism spectrum disorder. 29671924 2018
dbSNP: rs6609533
rs6609533
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0022578
Disease:
Keratoconus
0.020 GeneticVariation BEFREE However, the TIMP-1 rs6609533 polymorphism was associated with an increased risk of KC. 28197741 2017
dbSNP: rs6609533
rs6609533
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0022578
Disease:
Keratoconus
0.020 GeneticVariation BEFREE Our findings showed that the rs55703767G/T polymorphism decreased the risk of KC (OR = 0.26, 95% CI = 0.08-0.82, P = 0.022). rs17576A/G, associated with KC and the A allele, was significantly overrepresented in healthy individuals. rs6609533A/G (X-chromosome) increased the risk of KC in females (OR = 2.27, 95% CI = 1.06-4.76, P = 0.036). 28197741 2017
dbSNP: rs397514679
rs397514679
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C1510586
Disease:
Autism Spectrum Disorders
0.020 GeneticVariation BEFREE Detailed neuropsychological assessments revealed that SYN1 Q555X male mutation carriers showed specific language impairment and mild autistic spectrum disorder. 26096837 2015
dbSNP: rs397514679
rs397514679
Entrez Id: 6853
Gene Symbol: SYN1
SYN1
CUI: C0524528
Disease:
Pervasive Development Disorder
0.020 GeneticVariation BEFREE Detailed neuropsychological assessments revealed that SYN1 Q555X male mutation carriers showed specific language impairment and mild autistic spectrum disorder. 26096837 2015
dbSNP: rs4898
rs4898
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0019196
Disease:
Hepatitis C
0.020 GeneticVariation BEFREE We used PCR to analyze 188 patients with HCV-related liver disease (95 with chronic hepatitis and 93 with cirrhosis) for TIMP-1 372 T/C and TIMP-2 -418 G/C polymorphisms. 23563628 2013
dbSNP: rs4898
rs4898
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0025322
Disease:
Premature Menopause
0.010 GeneticVariation BEFREE The aim of our study was to investigate whether the TIMP polymorphisms TIMP1T > C (rs4898), TIMP1G > A (rs6609533), TIMP2G > C (rs8179090), TIMP2G > A (rs2277698), TIMP3G > A (rs135029), and TIMP4T > C (rs3755724), which regulate matrix metalloproteinases (MMPs), confer a risk for primary ovarian insufficiency (POI) in Korean women (further studies would be required to evaluate the associations between TIMP polymorphisms and POI in other populations). 30583769 2019
dbSNP: rs4898
rs4898
Entrez Id: 6853;7076;100616147
Gene Symbol: SYN1;TIMP1;MIR4769
SYN1;TIMP1;MIR4769
CUI: C0085215
Disease:
Ovarian Failure, Premature
0.010 GeneticVariation BEFREE Among the four TIMP loci, the TIMP1T > C (rs4898), TIMP1G > A (rs6609533), TIMP2G > C (rs8179090), TIMP2G > A (rs2277698), TIMP3G > A (rs135029), and TIMP4T > C (rs3755724) haplotypes were identified more frequently in POI patients than in control subjects and conferred susceptibility to POI (P <0.0001). 30583769 2019